PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC050391.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Nin-like

Protein Properties

Length: 211aa MW: 23863.3 Da PI: 9.1059

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC050391.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.5	2.1e-26	98	147	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k +s e +s+yF++pi++AAkeL+v+lT+LK++CR+ GI+RWPhRk++sl EcC050391.10 98 KMLSREAISEYFYMPITQAAKELNVGLTLLKKRCREVGIRRWPHRKLTSL 147 7899*******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.575	80	169	IPR003035	RWP-RK domain
Pfam	PF02042	1.2E-21	100	147	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MLATSYPDET WYSNLDVVEH SNAGVVKDNA IHLGDVNGLL EGIKEINGFF ETTGKKAVSS 60 GTHGDRAGLP DNMAMGNGSS GSSVERDSKE LETRTRIKML SREAISEYFY MPITQAAKEL 120 NVGLTLLKKR CREVGIRRWP HRKLTSLQAL IKNVQELGCG EDERKLQEAI ELLERERKLM 180 EEAPDLKLED KTRRLRQACF KANYKKRKLV P

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010045585.1	1e-145	PREDICTED: protein RKD4-like
Swissprot	Q9M9U9	9e-48	RKD1_ARATH; Protein RKD1
TrEMBL	A0A2G9H3R8	2e-57	A0A2G9H3R8_9LAMI; Uncharacterized protein
TrEMBL	A0A2R6QH61	3e-57	A0A2R6QH61_ACTCH; Uncharacterized protein
TrEMBL	F6GT76	1e-57	F6GT76_VITVI; Uncharacterized protein
STRING	XP_010045585.1	1e-144	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	3e-44	RWP-RK domain-containing protein