PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC050446.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

Trihelix

Protein Properties

Length: 488aa MW: 56157.4 Da PI: 7.4581

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC050446.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.9	3.8e-30	107	192	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r+++++r++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea EcC050446.20 107 RWPRQETLTLLEIRSRLDSRFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 192 8***********************************999*************************98..55667*****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.166	100	165	IPR017877	Myb-like domain
CDD	cd12203	3.34E-20	107	172	No hit	No description
Pfam	PF13837	7.0E-21	107	193	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MEMEDHHQYT AADLRHLINA RPPPPPPHIQ SISPPELFCG GGGHRNPTQH LESMMMGGGG 60 LHNSQRQGHS HNHQHHHQFG RDHSSPSSAA MAGAAGGLES ENGGNGRWPR QETLTLLEIR 120 SRLDSRFKEA NQKGPLWDEV SRIMSEEHGY QRSGKKCREK FENLYKYYKK TKEGKAGRQD 180 GKHYRFFRQL EALYGENANS NSILQAPSLP HSLHFHPPPN INDINQDASH HRHPHQLQRP 240 CESLSLSNSS DFDTSSSDDN EEDVSVEKGK KVRRGKRGWK IKIKEFIDSQ MRKLADRQEA 300 WLEKMMKALE EKERERELRE EEWKQQEMAR IEREHKFWEK EKAWIEARDV TFMDALQKLT 360 GRDLKFVPSP NELLAAAEIQ THQSDGLTKW SKDFDNFKKR KDNSRWCHYP SGSDEVMYNQ 420 GGSNCEIIKE QGPESMTRSV QMNNGSSSPS NSNAGNAMQE SCFRFMMVEG DNLWESYGMK 480 LTKGDQNQ

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MEMEDHHQYT AADLRHLINA RPPPPPPHIQ SISPPELFCG GGGHRNPTQH LESMMMGGGG  60
LHNSQRQGHS HNHQHHHQFG RDHSSPSSAA MAGAAGGLES ENGGNGRWPR QETLTLLEIR  120
SRLDSRFKEA NQKGPLWDEV SRIMSEEHGY QRSGKKCREK FENLYKYYKK TKEGKAGRQD  180
GKHYRFFRQL EALYGENANS NSILQAPSLP HSLHFHPPPN INDINQDASH HRHPHQLQRP  240
CESLSLSNSS DFDTSSSDDN EEDVSVEKGK KVRRGKRGWK IKIKEFIDSQ MRKLADRQEA  300
WLEKMMKALE EKERERELRE EEWKQQEMAR IEREHKFWEK EKAWIEARDV TFMDALQKLT  360
GRDLKFVPSP NELLAAAEIQ THQSDGLTKW SKDFDNFKKR KDNSRWCHYP SGSDEVMYNQ  420
GGSNCEIIKE QGPESMTRSV QMNNGSSSPS NSNAGNAMQE SCFRFMMVEG DNLWESYGMK  480
LTKGDQNQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010036725.1	0.0	PREDICTED: trihelix transcription factor PTL
Swissprot	Q9LZS0	1e-94	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	A0A059A3H8	0.0	A0A059A3H8_EUCGR; Uncharacterized protein
STRING	XP_010036725.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2767	28	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10000.1	6e-61	Trihelix family protein

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]