PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050465.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 335aa    MW: 36894.7 Da    PI: 7.4138
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050465.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012144166123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   y+C+ C+++F++   L  H  +H
  EcC050465.20 144 YECKTCSRTFPSFQALGGHRASH 166
                   99**********99999998887 PP
2zf-C2H211.80.00077229251123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C++Cg  F +   L  H+r+H
  EcC050465.20 229 HECSICGAEFASGQALGGHMRRH 251
                   78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.54E-8143166No hitNo description
PfamPF139124.8E-13143168IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93144171IPR007087Zinc finger, C2H2
SMARTSM003550.11144166IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
SuperFamilySSF576672.54E-8224251No hitNo description
PfamPF139121.1E-12228253IPR007087Zinc finger, C2H2
SMARTSM003550.016229251IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.577229251IPR007087Zinc finger, C2H2
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0055114Biological Processoxidation-reduction process
GO:0003676Molecular Functionnucleic acid binding
GO:0005507Molecular Functioncopper ion binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEAAATTAEE AFSGPRDYAG RIAKRKRTKR QRVQSPYRFG IASSPSDNDD SSHDHIVVNN  60
NSHAIVSANN HNFSPASSTE VEGMSTLEEE EDMANCLILL AQGHSKLPQK QAILEQDVAD  120
LKFNSKRYLE ASTGGGNKIG YYVYECKTCS RTFPSFQALG GHRASHKKPN KATAEDKKPQ  180
QQFGTSSSEE EESAQFKRHN VTSSALSLQL SGQNVLFGSS FSNKHPKVHE CSICGAEFAS  240
GQALGGHMRR HRTPAGTNMG LSLNPMTSES EESPARARNN AVSLDLDLNL PAPDEDDHND  300
HRFPLSSKKQ KQQQEQQENR SRLVFSVPAL VDCRY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010032134.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLA0A059ACS30.0A0A059ACS3_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010032134.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.15e-57C2H2 family protein