PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050503.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 154aa    MW: 17811.7 Da    PI: 10.2981
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050503.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.94.8e-27959151
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  krien  nrqvt+skRrng++KKA+E+SvLC+a+v++iif+ + k++ey++
  EcC050503.30  9 KRIENANNRQVTYSKRRNGLIKKAKEISVLCNAKVSLIIFGGSKKMHEYCT 59
                  79***********************************************96 PP
2K-box66.96.7e-2371142172
         K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 
                   y+++  k+l++ak+e+l+ e++++kke++nLq ++Rhl G+d++sL++keL  L + Le++l  +R++K  l
  EcC050503.30  71 YHRQCRKRLWDAKHENLNSEIDRIKKENDNLQIKLRHLNGQDINSLNHKELIVLDDVLENGLAFVRDQKASL 142
                   56667778*************************************************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.712161IPR002100Transcription factor, MADS-box
CDDcd002651.56E-36280No hitNo description
SuperFamilySSF554559.29E-34296IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.3E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-263859IPR002100Transcription factor, MADS-box
PfamPF014868.1E-1482142IPR002487Transcription factor, K-box
PROSITE profilePS5129710.59184154IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MGRGKIEIKR IENANNRQVT YSKRRNGLIK KAKEISVLCN AKVSLIIFGG SKKMHEYCTP  60
STKLTDILDE YHRQCRKRLW DAKHENLNSE IDRIKKENDN LQIKLRHLNG QDINSLNHKE  120
LIVLDDVLEN GLAFVRDQKA SLASFIYGPL KKLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-16171169MEF2 CHIMERA
6byy_B1e-16171169MEF2 CHIMERA
6byy_C1e-16171169MEF2 CHIMERA
6byy_D1e-16171169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055971.11e-94PREDICTED: floral homeotic protein PMADS 2
SwissprotQ074744e-73MADS2_PETHY; Floral homeotic protein PMADS 2
TrEMBLA0A059C2Y81e-93A0A059C2Y8_EUCGR; Uncharacterized protein
STRINGXP_010055971.16e-94(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.12e-63MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]