PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050553.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 221aa    MW: 24922.1 Da    PI: 7.2204
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050553.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-1368120155
                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   ++++h  +ErrRR+++N+ +  Lr+llP       ++K   ++  + Av+YI++L+
  EcC050553.30  68 KKKMHRDIERRRRKEMNTLYGSLRSLLPVeY---IKGKRATSDHITGAVNYINHLE 120
                   6899*************************77...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-1467138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.31967119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-1068120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.0E-1268137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.72E-1168123No hitNo description
SMARTSM003530.00173125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0055085Biological Processtransmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0022891Molecular Functionsubstrate-specific transmembrane transporter activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MFPLQPNSDP FYLQPNHNPI TEDLIIHDDQ DLHGLCFTNP KDKNKGSDES VLISFSRGNK  60
SDEDCDPKKK MHRDIERRRR KEMNTLYGSL RSLLPVEYIK GKRATSDHIT GAVNYINHLE  120
RNINEMGRRR DELKRGKSVC LGSPGPEVWS SGANSSMTAL SVRPCLDGVE IVIRSASSSD  180
RDHNFPLSKV LQLLLEEGIS VASCVSTRTS EMIFIHTIQS E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17681RRRRKE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035053.11e-158PREDICTED: transcription factor bHLH118
TrEMBLA0A059BYH31e-98A0A059BYH3_EUCGR; Uncharacterized protein
STRINGXP_010035053.11e-158(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25400.12e-36bHLH family protein