PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050657.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family RAV
Protein Properties Length: 324aa    MW: 36639.3 Da    PI: 8.6686
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050657.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.17.6e-124693154
           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                  s++kGV +   +g W A+I+       + +r++lg+f + eeAa a++ a+ kl+
  EcC050657.20 46 SKFKGVVQQQ-NGHWGAQIYA------NhQRIWLGTFKSDEEAAMAYDSAAIKLR 93
                  79****9888.8******999......44************************98 PP
2B3841.3e-26169272185
                   EEEE-..-HHHHTT-EE--HHH.HTT...........---.............--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...........ggkke...........esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                   f+k+ltpsdv+k++rlv+pkkfa ++           +                +++l+++d+s rsW+++++y+ +s ++v+t+GW++Fvk+++L+
  EcC050657.20 169 FQKELTPSDVGKLNRLVIPKKFAIKYlprisggseagK---GdaplqlrtlglDDVQLVFYDRSMRSWKFRYCYWSSSHSFVFTRGWNRFVKEKELR 262
                   99****************************96665551...0555666666776788**************************************** PP

                   TT-EEEEEE- CS
            B3  76 egDfvvFkld 85 
                   ++D+v F++ 
  EcC050657.20 263 ANDTVAFYMC 272
                   *******954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-74693IPR001471AP2/ERF domain
CDDcd000184.58E-2446104No hitNo description
SuperFamilySSF541713.27E-1646104IPR016177DNA-binding domain
PROSITE profilePS5103217.51747102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-1847102IPR001471AP2/ERF domain
SMARTSM003808.4E-2247108IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.3E-30166274IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-26168275IPR015300DNA-binding pseudobarrel domain
CDDcd100179.11E-26168271No hitNo description
PROSITE profilePS5086312.294169291IPR003340B3 DNA binding domain
SMARTSM010191.5E-22169280IPR003340B3 DNA binding domain
PfamPF023621.4E-23169272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0007165Biological Processsignal transduction
GO:0007275Biological Processmulticellular organism development
GO:0009414Biological Processresponse to water deprivation
GO:0010540Biological Processbasipetal auxin transport
GO:0042538Biological Processhyperosmotic salinity response
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEEETLSVIS NSDRNILAEG SDSNESALPS RLTTKRARQT PNGATSKFKG VVQQQNGHWG  60
AQIYANHQRI WLGTFKSDEE AAMAYDSAAI KLRSGDPHRN FPWSKLSVEE LNFQSCYSTE  120
AVLTMIKDGT YQSKFTDFVR ARTNGPHQEA GLDLVLAHPN GGLMCRQLFQ KELTPSDVGK  180
LNRLVIPKKF AIKYLPRISG GSEAGKGDAP LQLRTLGLDD VQLVFYDRSM RSWKFRYCYW  240
SSSHSFVFTR GWNRFVKEKE LRANDTVAFY MCEYREPRKE GRTFCMIDVH QRDKNGGGLG  300
EKGLGEEAKG SIEIMPVEGE KKDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-2516826913100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047119.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_010047121.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6881e-105RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A059CLZ10.0A0A059CLZ1_EUCGR; Uncharacterized protein
STRINGXP_010047119.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.11e-107RAV family protein