PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050662.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family YABBY
Protein Properties Length: 214aa    MW: 24288.5 Da    PI: 6.1607
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050662.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY196.21.4e-6071653169
         YABBY   3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesasts 95 
                   + s seq+CyvqC+fC+t+l+vsvP +sl++vvtvrCGhCt+llsvn++kas    +lla  sh   ++      +++++e+++++nve ++   + 
  EcC050662.20   7 LLSLSEQICYVQCGFCTTVLLVSVPCSSLSSVVTVRCGHCTTLLSVNMMKASfvplHLLAPLSH---DGP-----KEEFQEMEVQKNVELYS--PSF 93 
                   6789********************************************9998433333333333...222.....22233333333333333..333 PP

         YABBY  96 vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                   v+s++++++e+  ++r   v++PPekrqr Psaynrfikeei+r+ka+nP+i h+eafs aaknWa fP+  f+
  EcC050662.20  94 VNSSEVEDEETIAITR--VVNKPPEKRQRTPSAYNRFIKEEIRRLKAQNPNIPHKEAFSQAAKNWAQFPQHQFK 165
                   3333444555555554..699************************************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.1E-6210164IPR006780YABBY protein
SuperFamilySSF470951.7E-9109162IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.107.2E-7112163IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005840Cellular Componentribosome
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MATIDHLLSL SEQICYVQCG FCTTVLLVSV PCSSLSSVVT VRCGHCTTLL SVNMMKASFV  60
PLHLLAPLSH DGPKEEFQEM EVQKNVELYS PSFVNSSEVE DEETIAITRV VNKPPEKRQR  120
TPSAYNRFIK EEIRRLKAQN PNIPHKEAFS QAAKNWAQFP QHQFKGDNGE SIVQEVEREK  180
SISDDSVEVS GEGNGFRERK VARHFIWEKT PFDY
Functional Description ? help Back to Top
Source Description
UniProtEssential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018720233.11e-136PREDICTED: axial regulator YABBY 4
SwissprotQ9LDT34e-70YAB4_ARATH; Axial regulator YABBY 4
TrEMBLA0A059D8Z41e-135A0A059D8Z4_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010046639.11e-159(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80442740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.13e-59YABBY family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Simon MK,Skinner DJ,Gallagher TL,Gasser CS
    Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
    Genetics, 2017. 207(4): p. 1489-1500
    [PMID:28971961]