PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050664.70
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 261aa    MW: 30288 Da    PI: 6.3808
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050664.70genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.72.4e-26150233186
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                   rW+ +ev+aLi++r  ++ +l++g  k p Wee+s  m++ g++rs k+C+ekw+n+nk++kk  e  k++ s +s++cpyf++l+
  EcC050664.70 150 RWPASEVQALIALRAALQPKLQSG-FKRPIWEEISCSMSAMGYQRSTKKCREKWDNINKYFKKSIEKGKNH-SANSKSCPYFHDLD 233
                   8*********************99.********************************************98.77888*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.015143206IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.0E-4145216IPR009057Homeodomain-like
CDDcd122031.48E-18149212No hitNo description
PfamPF138371.9E-18149234No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055085Biological Processtransmembrane transport
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
SSSEEGDDDA SADVREPDNC KRKRSTRKNL ELFMKNMVMK LIARQEQMHW ELVQMLEKME  60
RERISREEAW HRQEMEQIKR NEELRAQETS RSLALISYIE KLMGHQVPQQ SNSLSVGEDE  120
DENQGPKDVE FDPPNSAEKC DPNLKQNNER WPASEVQALI ALRAALQPKL QSGFKRPIWE  180
EISCSMSAMG YQRSTKKCRE KWDNINKYFK KSIEKGKNHS ANSKSCPYFH DLDVLYKAGL  240
IDSTKALDST SRKEECEPST V
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039436.10.0PREDICTED: trihelix transcription factor GT-2
TrEMBLA0A058ZX420.0A0A058ZX42_EUCGR; Uncharacterized protein
STRINGXP_010039436.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.14e-47Trihelix family protein