PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050673.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 151aa    MW: 16529.4 Da    PI: 7.5098
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050673.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.4e-183081256
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                  +y+GV +++ +g+++AeIrd +    + +r++lg+fgta++Aa+a+++a+ +++g+
  EcC050673.30 30 RYRGVQRRP-SGKYAAEIRDSTR---HgARVWLGTFGTAKDAAQAYDRAAYAMRGH 81
                  69****999.7*********422...25**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.2723088IPR001471AP2/ERF domain
CDDcd000183.45E-223089No hitNo description
PfamPF008476.8E-133081IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-213089IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.8E-283089IPR001471AP2/ERF domain
SMARTSM003801.1E-303094IPR001471AP2/ERF domain
PRINTSPR003676.1E-83142IPR001471AP2/ERF domain
PRINTSPR003676.1E-85470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006552Biological Processleucine catabolic process
GO:0015996Biological Processchlorophyll catabolic process
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MELENPRRKI EHEEGPGGEG GGEDGVPQVR YRGVQRRPSG KYAAEIRDST RHGARVWLGT  60
FGTAKDAAQA YDRAAYAMRG HTAILNFPNE FPVGCKAGSS LPSLSLSSSA FSSLKTRGGT  120
RGRDKRVVEF ECLDDNLLEE LLENEGKKSM E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-30191373114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018715620.16e-53PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC59e-36ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A059AU471e-51A0A059AU47_EUCGR; Uncharacterized protein
STRINGXP_010039174.13e-37(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.17e-22ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]