PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050773.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 368aa    MW: 41150.8 Da    PI: 7.2894
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050773.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.7e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++lv++++++G g W+t ++  g++R++k+c++rw +yl
     EcC050773.40 14 KGPWTVEEDKKLVEYIQKHGHGKWRTLPKNAGLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding52.31.3e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr+T eE+e +++++  lG++ W++Ia+ ++ gRt++++k++w+++
     EcC050773.40  67 RGRFTFEEEETIIQLHGVLGNK-WSAIAAQLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-26564IPR009057Homeodomain-like
PROSITE profilePS5129425.472965IPR017930Myb domain
SuperFamilySSF466891.31E-3111108IPR009057Homeodomain-like
SMARTSM007175.5E-151363IPR001005SANT/Myb domain
PfamPF002493.2E-161461IPR001005SANT/Myb domain
CDDcd001672.24E-121661No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2665116IPR009057Homeodomain-like
PROSITE profilePS5129420.36766116IPR017930Myb domain
SMARTSM007171.5E-1566114IPR001005SANT/Myb domain
PfamPF002498.6E-1567111IPR001005SANT/Myb domain
CDDcd001672.01E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007205Biological Processprotein kinase C-activating G-protein coupled receptor signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0004143Molecular Functiondiacylglycerol kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGKSPCCDKD GLKKGPWTVE EDKKLVEYIQ KHGHGKWRTL PKNAGLRRCG KSCRLRWTNY  60
LRPDIKRGRF TFEEEETIIQ LHGVLGNKWS AIAAQLPGRT DNEIKNYWNT HIKKRLLKMG  120
IDPVTHSPRL DLLDLSSILT SSLHAHYCSQ FINVPSSLNT NGYAMNPDFL DLTTTLFSSS  180
FKSPEVTQNV QEITPEVLDQ FQYSLLANQL HNPPNNSHFL SENRPMHSNN ASEIPPPNAS  240
NFVSCHQNPM SSYWQADGDI QHQYMNIAET SVSVPNHGFD GSCRSNLDHF SSGHHVFQSN  300
DANKVQNFGL GSSLSSPMSS SLTWNSSSTT STAYLGGCNN EDRDGHSSHI MSSLYDAAPS  360
SFFVNGIM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31121165108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060488.10.0PREDICTED: protein ODORANT1
TrEMBLA0A059BM260.0A0A059BM26_EUCGR; Uncharacterized protein
STRINGXP_010060488.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.17e-85MYB-like 102