PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050789.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family M-type_MADS
Protein Properties Length: 115aa    MW: 12846.5 Da    PI: 4.7484
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050789.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.82.1e-161258349
                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                  i +   r vt+skRr+g++ KA+ L+ LC+a+ av++fs+ gk y +
  EcC050789.10 12 IADPAARLVTYSKRRKGLFNKASQLCRLCGARTAVLVFSPAGKPYSF 58
                  66778899**********************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.217262IPR002100Transcription factor, MADS-box
SMARTSM004327.4E-19261IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-22479IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-13424IPR002100Transcription factor, MADS-box
PfamPF003192.4E-201258IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-132439IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-133960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0016758Molecular Functiontransferase activity, transferring hexosyl groups
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MGKRRRREIA EIADPAARLV TYSKRRKGLF NKASQLCRLC GARTAVLVFS PAGKPYSFGD  60
PSADEIIGDY LSHSDCDGDV TPPMGLTQWA DWMETEWEAC ATEEDLESLI LKYEA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1426RRREIAEIADPAARLVTYSKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010045944.15e-72PREDICTED: MADS-box protein SOC1-like
RefseqXP_010046031.14e-72PREDICTED: protein MADS AFFECTING FLOWERING 5-like
RefseqXP_018718484.11e-73PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLA0A059D1D15e-72A0A059D1D1_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010045950.13e-74(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-22AGAMOUS-like 61