PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC050801.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

GATA

Protein Properties

Length: 265aa MW: 28567 Da PI: 7.7132

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC050801.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	51.5	1.3e-16	211	247	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt++ Tp++Rrgp+g+++LCnaCGl+++ +g+ EcC050801.10 211 CTHCGTSSkcTPMMRRGPSGPRSLCNACGLFWANRGT 247 *********************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	9.0E-10	76	111	IPR010399	Tify domain
PROSITE profile	PS51320	13.358	76	111	IPR010399	Tify domain
Pfam	PF06200	4.2E-12	79	110	IPR010399	Tify domain
PROSITE profile	PS51017	12.65	143	185	IPR010402	CCT domain
Pfam	PF06203	3.7E-16	143	185	IPR010402	CCT domain
SuperFamily	SSF57716	9.03E-12	204	256	No hit	No description
SMART	SM00401	9.4E-16	205	258	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	1.6E-14	209	252	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	10.646	211	264	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	2.9E-14	211	247	IPR000679	Zinc finger, GATA-type
CDD	cd00202	5.35E-16	211	257	No hit	No description
PROSITE pattern	PS00344	0	211	238	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MYAHPHHVNL PKPIAGDEDG SGNSGGDSME GSHIRYEPQA LDDGATAGAS MGGMIEDIPP 60 DAVYVPGSGA DMGMAGGEEA SQLTLSFRGQ VYVFDAVTPK KVHAVLLLLG GCELSSGTQS 120 MDLALQNQRG VVDFPPRCSL PQRAASLNRF RQKRKERCFD KKVRYSVRQE VALRMQRNKG 180 QFTSSKKSEG ESGWGSAQDS GQDEAPQETC CTHCGTSSKC TPMMRRGPSG PRSLCNACGL 240 FWANRGTLRD LSKRTQDHPL TSAEQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010061562.1	0.0	PREDICTED: GATA transcription factor 25
Swissprot	Q9LRH6	1e-87	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A059BRF6	0.0	A0A059BRF6_EUCGR; Uncharacterized protein
STRING	XP_010061562.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	1e-75	GATA-type zinc finger protein with TIFY domain

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]