PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050808.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 325aa    MW: 35445.1 Da    PI: 6.7254
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050808.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH451.9e-14132178354
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  EcC050808.20 132 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 178
                   79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.907129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-12132178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.19E-14133185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-15133187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-13135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.97E-5142181No hitNo description
Gene3DG3DSA:3.30.70.2601.4E-4216267No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MHHHHQNDHP FGGAVFHPDL QVPPSVLPWP LPQPHPAFHP VREPDPFLLP PPPPLPPSPY  60
GGFFNRRAPP LQFAYDGGPA SDHLRILSDA LAAGAAGHPG ATGAVAPFGL QAELGKMTAQ  120
EIMDAKALAA SKSHSEAERR RRERINNHLA KLRSLLPSTT KTDKASLLAE VIQHVKELKR  180
QTSLIAETSP IPTETDELTV DTSDEEVDGK LVIKASLCCE DRSDLLPDLI KTLKALRLRT  240
LKAEITTLGG RVRNVLFVTG DHDQDLSGDI GEHQEQQQQI QQYSISSIQE ALKGVIEKAG  300
GGDESSSGNV KRQRTNVNIL EHRSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137142ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010066748.10.0PREDICTED: transcription factor bHLH30
SwissprotQ9S7Y13e-98BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A059BEY10.0A0A059BEY1_EUCGR; Uncharacterized protein
STRINGXP_010066748.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70482843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-73bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]