PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC050897.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family AP2
Protein Properties Length: 368aa    MW: 40938 Da    PI: 8.0541
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC050897.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.51.2e-1156112155
           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  EcC050897.40  56 SIYRGVTRHRWTGRYEAHLWDkNCWNVsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 112
                   57*******************88886677788888********************98 PP
2AP250.55.1e-16155206155
           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  EcC050897.40 155 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAVAYDMAAIEYRG 206
                   89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.9E-1556122IPR016177DNA-binding domain
PfamPF008473.9E-856112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-1357121IPR001471AP2/ERF domain
PROSITE profilePS5103219.08557120IPR001471AP2/ERF domain
SMARTSM003801.9E-2057126IPR001471AP2/ERF domain
PRINTSPR003674.3E-65869IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-18155216IPR016177DNA-binding domain
CDDcd000183.77E-23155216No hitNo description
PfamPF008471.5E-11155206IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17156215IPR001471AP2/ERF domain
SMARTSM003805.0E-25156220IPR001471AP2/ERF domain
PROSITE profilePS5103218.255156214IPR001471AP2/ERF domain
PRINTSPR003674.3E-6196216IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015074Biological ProcessDNA integration
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MVKLSQQSRR DVAAASESNK GGNNGSAVTS VVNGGVAKVK RTRRTVPRDS PPQRSSIYRG  60
VTRHRWTGRY EAHLWDKNCW NVSQNKKGRQ GAYDDEEAAA HAYDLAALKY WGRDTILNFP  120
VSTYETELVE MEGQSREEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK  180
YLYLGTYATQ EEAAVAYDMA AIEYRGLNAV TNFDLSRYIK WLKPNADAAA AAANGITQPN  240
TNNNNTDVLT SNLSDGFGLS YSQKPQTSDS NQEAIQAQPR SATSALGLLL QSSKFREMME  300
MASRADDAAS ATPQEESTEA LKRSFPADVQ TYFECHQDSN NFGGDGDDII FRELNTYVPP  360
SFQCEFDA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010051046.20.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-111AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A059CT741e-176A0A059CT74_EUCGR; Uncharacterized protein
STRINGXP_010051046.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-104ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]