PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC051092.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 252aa MW: 28190.1 Da PI: 9.6285

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC051092.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.4	6.1e-49	19	145	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 ppGfrFhPtdeel+v+yLk+kv+++ +++ evi+++diy+++Pw+Lpkk+ +e ewyfFs+r++ky++g r+nra+ sgyWkatg dk++l++ ++ EcC051092.30 19 PPGFRFHPTDEELLVYYLKNKVASRLVPA-EVIADIDIYQYNPWELPKKAFFGEGEWYFFSPRNRKYPNGGRPNRAAGSGYWKATGIDKPILTSgGT 114 9***********************999.99***********87778999*********************************99677 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 + +g+kk Lvf+ gr pkg kt+W m+eyrl EcC051092.30 115 KSIGVKKALVFHIGRPPKGMKTEWSMDEYRL 145 78*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-59	16	172	IPR003441	NAC domain
PROSITE profile	PS51005	57.172	18	172	IPR003441	NAC domain
Pfam	PF02365	2.3E-25	19	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006396	Biological Process	RNA processing
GO:0006886	Biological Process	intracellular protein transport
GO:0006952	Biological Process	defense response
GO:0005618	Cellular Component	cell wall
GO:0016021	Cellular Component	integral component of membrane
GO:0000166	Molecular Function	nucleotide binding
GO:0003677	Molecular Function	DNA binding
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005484	Molecular Function	SNAP receptor activity
GO:0008173	Molecular Function	RNA methyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MDLWVDAAQP ARSFPAAFPP GFRFHPTDEE LLVYYLKNKV ASRLVPAEVI ADIDIYQYNP 60 WELPKKAFFG EGEWYFFSPR NRKYPNGGRP NRAAGSGYWK ATGIDKPILT SGGTKSIGVK 120 KALVFHIGRP PKGMKTEWSM DEYRLIDATV RPPRSKRSMR LDDWVLCRVR QKEKVPRNAG 180 SHHGDFSSST KAAPSYPQNN GEVLSVHTGL CKDIAMENPF QDCLVMASLL SGQVHCPMNS 240 VSSISSQAPD NN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-66	17	173	16	166	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-66	17	173	16	166	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-66	17	173	16	166	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-66	17	173	16	166	NO APICAL MERISTEM PROTEIN
4dul_A	4e-66	17	173	16	166	NAC domain-containing protein 19
4dul_B	4e-66	17	173	16	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. {ECO:0000250}.
UniProt	Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269\|PubMed:17124321, ECO:0000269\|PubMed:22278768}.
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010032014.1	0.0	PREDICTED: NAC domain-containing protein 68
Swissprot	A0SPJ6	1e-71	NAMB2_TRITD; NAC transcription factor NAM-B2
Swissprot	A2YMR0	1e-71	NAC10_ORYSI; NAC transcription factor ONAC010
Swissprot	K4BNG7	1e-72	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	A0A059AC48	1e-169	A0A059AC48_EUCGR; Uncharacterized protein (Fragment)
STRING	XP_010032014.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	2e-72	NAC domain containing protein 2

Publications ? help Back to Top
Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat. Science, 2006. 314(5803): p. 1298-301 [PMID:17124321] Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]