PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC051101.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 449aa    MW: 50000.8 Da    PI: 7.3973
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC051101.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.71e-08266308754
                   HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
           HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                   e+Er+RR+++N++f  Lr+++P+ +       ++ a+ L  Av+Y+ +L
  EcC051101.10 266 EVERQRREKMNQRFYALRSVVPNiS------GMDRASLLADAVDYVVEL 308
                   89*********************66......599999999999998655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.1E-3726194IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474591.19E-14256321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.964259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.03E-10261313No hitNo description
SMARTSM003532.0E-10265314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.8E-14266322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-6266308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MEELTSCASS SLAVPLYHET SPTLQQLVTL ILQAQPEHWV YSIFWRPSRD DHGRLFLTWG  60
HGHFRGTARD PFPSKPTTNR VLKEAQYPDG QFADGSDIGD PEWYYIFSVT RSYSSEEGIL  120
GRAFRSGGHI WLSGDDHPEL EMCESDDRVK EARMHGIQSI VCISIPNGSG VLELGSTEII  180
HEDRSFVLSA KSLFPFHFSN PLINFRGENP SDDARQEPAL VGASKRPYAK PVRGVHHDIS  240
GPFAVDQGDK DSSLSPSPSS RLKPGEVERQ RREKMNQRFY ALRSVVPNIS GMDRASLLAD  300
AVDYVVELRS QIAALESKVV KSKQSSPKRL KSCRAVDTFS DLSKTTSLSS KNSSIRAAMT  360
LAVPGWREME VDVKVVGQEA VVRVWIPSLE HPCARLMEVL KELELAIQHA SMSCAKGMML  420
QEVAIRTPVA CRVSDESIRD AIRRKLGKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-20151972195Transcription factor MYC3
4rqw_B7e-20151972195Transcription factor MYC3
4rs9_A7e-20151972195Transcription factor MYC3
4yz6_A7e-20151972195Transcription factor MYC3
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010058369.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A059C2920.0A0A059C292_EUCGR; Uncharacterized protein
STRINGXP_010058369.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-47bHLH family protein