PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC051183.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 87aa    MW: 9965.43 Da    PI: 10.924
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC051183.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.81.7e-193264335
          GATA  3 nCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                  +C++t++p+WRrgp g+ktLCnaCG++yrk ++
  EcC051183.20 32 QCNATTSPMWRRGPLGPKTLCNACGIKYRKDEE 64
                  8*****************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.1E-122271IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-132570No hitNo description
Gene3DG3DSA:3.30.50.103.5E-142673IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.72E-112761No hitNo description
PfamPF003205.7E-173264IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.7143382IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006810Biological Processtransport
GO:0007165Biological Processsignal transduction
GO:0016020Cellular Componentmembrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005215Molecular Functiontransporter activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
YSSGRPQKLP VRRRQQSHDD TDSPIKRCVN PQCNATTSPM WRRGPLGPKT LCNACGIKYR  60
KDEEKRRTQV IMQQLHELAA ARHKPAA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022728763.19e-20GATA transcription factor 29-like
SwissprotQ9LT452e-17GAT29_ARATH; GATA transcription factor 29
TrEMBLA0A2I0JIN91e-18A0A2I0JIN9_PUNGR; Uncharacterized protein
STRINGGorai.009G070200.12e-17(Gossypium raimondii)
STRINGXP_002528130.11e-17(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.19e-20GATA transcription factor 29
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]