PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC051371.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family GATA
Protein Properties Length: 85aa    MW: 9330.95 Da    PI: 8.3909
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC051371.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.41.8e-17137135
          GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                  C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg+
  EcC051371.20  1 CHHCGISEksTPMMRRGPEGPRTLCNACGLMWANKGT 37
                  *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002021.95E-12150No hitNo description
PROSITE profilePS501149.512152IPR000679Zinc finger, GATA-type
PROSITE patternPS003440128IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.98E-13149No hitNo description
SMARTSM004018.8E-10148IPR000679Zinc finger, GATA-type
PfamPF003202.0E-15137IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.4E-16142IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
CHHCGISEKS TPMMRRGPEG PRTLCNACGL MWANKGTLRD LSKAAHPGVQ VSSLNRNEVG  60
NQLLLLLNYL SPLELFFCLG IVFTC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010034076.13e-38PREDICTED: GATA transcription factor 28 isoform X1
SwissprotQ8H1G02e-27GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A059AJ017e-37A0A059AJ01_EUCGR; Uncharacterized protein
STRINGXP_010034076.11e-37(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-28ZIM-like 1