PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC051408.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C3H
Protein Properties Length: 248aa    MW: 26561.8 Da    PI: 7.729
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC051408.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.91.4e-12116142127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   +++++C+f+++tG Ck+G+ C+F+H++
  EcC051408.10 116 PGQPECQFYMKTGDCKFGAVCRFHHPR 142
                   5789*********************96 PP
2zf-CCCH41.22.8e-13162188127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                   ++++lC f++r+G+Ck+G++CkF H++
  EcC051408.10 162 PGEPLCIFYSRYGICKFGPSCKFDHPM 188
                   589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.8E-6115142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596115143IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9117142IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6119145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-5121143IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-7161188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709161189IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-10163188IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6164189IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4166186IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055085Biological Processtransmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
SPTTPTQQSY PGVTSWSRAS FIPSPRWQGP SSYTPLIVPQ GMVSIPGWNA YSGQLGSVSS  60
SDSQLIMMGQ SQIFGSSGQS DSVNTGSPGA FSSYQSGSVP VGFYALQRDN IFPERPGQPE  120
CQFYMKTGDC KFGAVCRFHH PRERLLPAPD CLLSPIGLPL RPGEPLCIFY SRYGICKFGP  180
SCKFDHPMGI LNNLSASSPS GAPVRRMLAS SSGTAALVLS ESGPGNPRRL SLSETRQIPS  240
DDNIDSDE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010038283.11e-177PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF91e-121ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A059D2741e-175A0A059D274_EUCGR; Uncharacterized protein
STRINGXP_010038283.11e-176(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-74zinc finger protein 1