PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC051844.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

M-type_MADS

Protein Properties

Length: 237aa MW: 27080.2 Da PI: 9.8613

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC051844.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	55.2	8.7e-18	11	51	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+ r+ tf kR+ng++KK +ELS+LC++e++ i++s+ EcC051844.30 11 IANDAARKATFKKRKNGLMKKVSELSTLCGIEACTIVYSPY 51 899************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	7.3E-24	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.946	1	49	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.54E-23	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.05E-29	2	85	No hit	No description
PRINTS	PR00404	2.8E-9	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.7E-19	11	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-9	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-9	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0015074	Biological Process	DNA integration
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MTRKKVILAY IANDAARKAT FKKRKNGLMK KVSELSTLCG IEACTIVYSP YQAEPEVWPS 60 MLGARRAIAR FKNMSEMDQS KRMVNQREFI WQRIVKAEEQ LKKQLRENRE REIVQVMYRA 120 LVREGLQGLT IVDLNDLGWM LDKTGKEIEE RIKKLKKSAP SSEQAASAEL QADKAAPENH 180 AALNGVVAVE AMQNQPWYMD LLKPRNEGDA LNLGRNDPMP SYPYGNPAPS WSDFYFP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKVILAYIANDAARKATFKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010056504.1	1e-163	PREDICTED: agamous-like MADS-box protein AGL80
Refseq	XP_010058573.1	1e-163	PREDICTED: agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	2e-51	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	A0A059C501	1e-162	A0A059C501_EUCGR; Uncharacterized protein
STRING	XP_010056504.1	1e-162	(Eucalyptus grandis)
STRING	XP_010058573.1	1e-162	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	3e-49	AGAMOUS-like 80

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]