PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC052023.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 512aa    MW: 55297.2 Da    PI: 8.0797
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC052023.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.83.9e-18227276255
                   HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   r +h++ E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI++Lq
  EcC052023.20 227 RSKHSATEQRRRSKINDRFQMLRSLIPNS----DQKRDKASFLLEVIEYIQYLQ 276
                   889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.2E-23222294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-18224292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.161225275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-15227279No hitNo description
PfamPF000101.2E-15227276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-13231281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
SFLKTHDFLG KTGAKEEATS EISSSLERPP PPAPPGPPPS VPPPQSVEHV LPGGIGTYSI  60
SHISYFNNQN PPKPEATIYT VAQASSTDRT DENSNCSSYT NSGFTLWEES AAKKGKTGKE  120
NMPSASVREA EVKLGPWPAS ERPSHSSSNN NHRNSFSSLS SSQPSGAKNK SFMDMIRSAK  180
SGSNQEDELD DDDGEFLLKK ETSPIPKGEL RVKVDGKSSD QKANTPRSKH SATEQRRRSK  240
INDRFQMLRS LIPNSDQKRD KASFLLEVIE YIQYLQEKVT TYEGSFQGWS QEPANMMPLR  300
NGQRPTDNYV DQSRNITSGS SPALVFAAKV DENNIAMAPA VFRSAKNPLE PEMGSVTAFK  360
SVEHHPGMTN RAAPFPMSLQ PNISNCVSGS GAVARGDPNL ENNASQPLTQ ISRIKSLTNE  420
CSASTDKLKE EELTIEGGTI SISNVYSQGS GVDLSQASIS VQIDLGKQAN GRNAASSSLP  480
KDTEARNQGV TRPRAAGEIA DPALKKLKTG KS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018723261.10.0PREDICTED: transcription factor BIM1 isoform X3
TrEMBLA0A059CZX00.0A0A059CZX0_EUCGR; Uncharacterized protein
STRINGXP_010031175.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69672744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.47e-86bHLH family protein