PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC052230.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 128aa    MW: 14480.9 Da    PI: 5.2058
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC052230.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM591.6e-1866172128
           NAM  72 krknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                   k + r+t +gyWk  g  ++v++++++ vg+k++Lv+y g+ap g++t+W+mheyrl
  EcC052230.40   6 KTPDRITGNGYWKPMGD-EPVFTSSSKRVGMKQSLVYYLGEAPGGTRTNWIMHEYRL 61 
                   46789**********98.677777999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.41196IPR003441NAC domain
PfamPF023652.4E-11161IPR003441NAC domain
SuperFamilySSF1019415.49E-23194IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0010020Biological Processchloroplast fission
GO:0016559Biological Processperoxisome fission
GO:0048268Biological Processclathrin coat assembly
GO:0055114Biological Processoxidation-reduction process
GO:0005777Cellular Componentperoxisome
GO:0009707Cellular Componentchloroplast outer membrane
GO:0030136Cellular Componentclathrin-coated vesicle
GO:0003677Molecular FunctionDNA binding
GO:0003924Molecular FunctionGTPase activity
GO:0005525Molecular FunctionGTP binding
GO:0005545Molecular Function1-phosphatidylinositol binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0030276Molecular Functionclathrin binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
YFFSRKTPDR ITGNGYWKPM GDEPVFTSSS KRVGMKQSLV YYLGEAPGGT RTNWIMHEYR  60
LSNGTNSGSS SSRSSKRKGY PKIDYSKWVV CRVYEHGDDD NDDNGAELSC LDEVFLSLDD  120
LDEISTPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-2219574164NO APICAL MERISTEM PROTEIN
1ut4_B1e-2219574164NO APICAL MERISTEM PROTEIN
1ut7_A1e-2219574164NO APICAL MERISTEM PROTEIN
1ut7_B1e-2219574164NO APICAL MERISTEM PROTEIN
3swm_A1e-2219577167NAC domain-containing protein 19
3swm_B1e-2219577167NAC domain-containing protein 19
3swm_C1e-2219577167NAC domain-containing protein 19
3swm_D1e-2219577167NAC domain-containing protein 19
3swp_A1e-2219577167NAC domain-containing protein 19
3swp_B1e-2219577167NAC domain-containing protein 19
3swp_C1e-2219577167NAC domain-containing protein 19
3swp_D1e-2219577167NAC domain-containing protein 19
4dul_A1e-2219574164NAC domain-containing protein 19
4dul_B1e-2219574164NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010030072.15e-90PREDICTED: NAC domain-containing protein 104
SwissprotQ8GWK62e-37NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A059ASW01e-88A0A059ASW0_EUCGR; Uncharacterized protein
STRINGXP_010030072.12e-89(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-38xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]