PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC052470.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

M-type_MADS

Protein Properties

Length: 129aa MW: 15016.1 Da PI: 6.5363

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC052470.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.7	5.3e-27	10	58	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien +nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs+++++ +s EcC052470.10 10 RIENITNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSDRVSHFS 58 8*******************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.5E-36	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	28.791	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.06E-29	2	83	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.81E-33	2	75	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-25	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.2E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	4.6E-25	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0030001	Biological Process	metal ion transport
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MGRVKLEIRR IENITNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SDRVSHFSGK 60 RRIEDVFTRF INLTDQERDT TLQQLRNEND LALQLANPGA VDADAEELHQ QIGMLRQQLL 120 EAEEQIRYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	2e-17	1	59	1	59	MEF2 CHIMERA
6byy_B	2e-17	1	59	1	59	MEF2 CHIMERA
6byy_C	2e-17	1	59	1	59	MEF2 CHIMERA
6byy_D	2e-17	1	59	1	59	MEF2 CHIMERA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020410352.1	2e-66	agamous-like MADS-box protein AGL104 isoform X3
Swissprot	Q1PFC2	4e-60	AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBL	A0A2I4H0X0	8e-63	A0A2I4H0X0_JUGRE; agamous-like MADS-box protein AGL104 isoform X1
STRING	XP_010026056.1	1e-79	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77980.1	2e-62	AGAMOUS-like 66

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]