PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC052533.60

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 237aa MW: 25755.5 Da PI: 10.3338

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC052533.60	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.7	4.2e-13	50	96	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riN +++Lr+llP+ K++Ka+ L ++v+ +k+L EcC052533.60 50 RSHKEAERRRRQRINAHLSTLRSLLPST-----SKMDKASLLAQVVHRVKKL 96 78***********************7.....6**********999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.51	47	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.15E-13	50	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-10	50	96	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-13	50	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.45E-11	50	101	No hit	No description
SMART	SM00353	4.4E-12	53	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	1.5E-4	141	205	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MDSRPLGLGI PHAGPARPCQ EPPAASVNSI DSADPSLSHM MRKLSMTASR SHKEAERRRR 60 QRINAHLSTL RSLLPSTSKM DKASLLAQVV HRVKKLRSQV ADVARRDGPA CLCPELPGPL 120 PSESDEASLS RCSGEEGLVE ATVCCDDRPS LNRDLGQAVR AFGARVVRAE MATLAGRTRC 180 VLRIKWAGRE SEFGGLKRAL RMVVENRALD CGPDRVAVGD KRTRAYNSID TGVDGRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010064697.2	1e-165	PREDICTED: putative transcription factor bHLH107
TrEMBL	A0A059BQQ8	1e-129	A0A059BQQ8_EUCGR; Uncharacterized protein
STRING	XP_010064697.1	1e-165	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56770.1	3e-21	bHLH family protein