PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC052566.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

bHLH

Protein Properties

Length: 242aa MW: 26741.8 Da PI: 6.674

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC052566.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.8	1.1e-09	63	110	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq EcC052566.10 63 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 110 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-17	57	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.23E-11	57	114	No hit	No description
PROSITE profile	PS50888	15.663	59	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-17	59	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.3E-7	63	110	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-10	65	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
VSESHDNSSP KRCKPNEDDG NGNDTAKGED DAKGNSKKND AKPPEPPKDY IHVRARRGQA 60 TDSHSLAERV RREKISERMK LLQDLVPGCN KVTGKALMLD EIINYVQSLQ RQVEFLSMKL 120 ASVNTTLDFN ADTLMSKDMF QPNNSVPRPM FPLGSSATAF HGHHRPQTQP LPPPLQGHVS 180 SGAATQVEPL NLGPCHTVES HSPLNDLQYQ NFCGDDLQSI VQMSFGQNSN QETAFQLQTF 240 HG

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00660	PBM	Transfer from Pp3c6_9520	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010036765.1	1e-176	PREDICTED: transcription factor bHLH62
Swissprot	Q9SRT2	4e-68	BH062_ARATH; Transcription factor bHLH62
TrEMBL	A0A059A4Z6	1e-175	A0A059A4Z6_EUCGR; Uncharacterized protein
STRING	XP_010036765.1	1e-176	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7406	20	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	8e-69	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]