PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC052606.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NF-YC
Protein Properties Length: 135aa    MW: 14931.1 Da    PI: 10.1449
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC052606.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC45.81.3e-1412931898
         NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98
                  + +lP  r+k+i+k d d++++ +ea  l++ + +lf+  l+ rs   a e+kr+t+k  ++  av+r   + dfl+d  p 
  EcC052606.50 12 RPDLPTGRVKRIMKLDRDINKVNSEALLLVTCSTQLFLEFLAERSAQVAAEKKRKTVKLDQMRIAVKRHRpTSDFLLDSLPA 93
                  5689**********************************9***************************9975389*****9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.02E-161392IPR009072Histone-fold
PfamPF008082.3E-161577IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.7E-171592IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005819Cellular Componentspindle
GO:0005874Cellular Componentmicrotubule
GO:0009524Cellular Componentphragmoplast
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MAEEDDAAST IRPDLPTGRV KRIMKLDRDI NKVNSEALLL VTCSTQLFLE FLAERSAQVA  60
AEKKRKTVKL DQMRIAVKRH RPTSDFLLDS LPAPAQSVDG QSAEKVRSRP GAEKPAPAGT  120
RRIDDFFGKP VSEVS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010044803.12e-92PREDICTED: nuclear transcription factor Y subunit gamma
TrEMBLA0A2N9HE568e-60A0A2N9HE56_FAGSY; Uncharacterized protein
STRINGXP_010044803.17e-92(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.17e-53nuclear factor Y, subunit C13