PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC052727.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 292aa MW: 32924.1 Da PI: 6.4192

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC052727.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.9	2.5e-50	10	138	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 lppGfrF P+deelv++yL +k++++++ + evd++++ePw+Lp+ +k + +ewyfFs rd+kyatg r+nrat sgyWkatgkd+ v++ + EcC052727.20 10 LPPGFRFYPSDEELVCHYLYRKIANEEVLK-GSLVEVDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGYRTNRATISGYWKATGKDRVVHDPsT 105 79**********************9655.67***********88888999*********************************9877 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 +e+vg++ktLvfy++rap+g kt W+mhe+rle EcC052727.20 106 QEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLE 138 888*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-59	8	165	IPR003441	NAC domain
PROSITE profile	PS51005	57.244	10	165	IPR003441	NAC domain
Pfam	PF02365	2.2E-27	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0030246	Molecular Function	carbohydrate binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MGLRDIGATL PPGFRFYPSD EELVCHYLYR KIANEEVLKG SLVEVDLHTC EPWQLPEVAK 60 LNATEWYFFS FRDRKYATGY RTNRATISGY WKATGKDRVV HDPSTQEVVG MRKTLVFYRN 120 RAPNGIKTGW IMHEFRLESP HMPPKMNPVA NDWQEDWVLC RVFYKSKEDN AINTLLSPHY 180 TFKEATAASS APSANFDTSH YISSPNQAFS CGMMTYPQVA SLSSTSSSLL SHKPQSTPNL 240 PHQSKGASTK LIDDGYGFMW DMNFGDNSLV GDALPSNLDD MSIDMDGGSV FL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	6e-47	1	168	1	171	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269\|PubMed:11114891}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010037974.1	0.0	PREDICTED: NAC domain-containing protein 21/22
Swissprot	Q84TE6	5e-61	NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBL	A0A059A8S3	0.0	A0A059A8S3_EUCGR; Uncharacterized protein
STRING	XP_010037974.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3436	28	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	7e-91	NAC domain containing protein 74

Publications ? help Back to Top
Le Hénanff G, et al. Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance. J. Exp. Bot., 2013. 64(16): p. 4877-93 [PMID:24043850] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Huo X,Wang C,Teng Y,Liu X Identification of miRNAs associated with dark-induced senescence in Arabidopsis. BMC Plant Biol., 2015. 15: p. 266 [PMID:26530097] Chen X, et al. Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis. Plant Physiol., 2016. 170(4): p. 2136-45 [PMID:26850273] Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]