PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC052744.10

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 135aa MW: 15662.8 Da PI: 8.4548

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC052744.10	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	81.2	2.2e-25	5	129	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk.atgkdkevlskk 96 lp G+rF P+dee+ ++ L++kv+g+ + e+i+e+d+y+ ePw++ ++ ek++y F+k + k+ +r +r++ sgyWk a+ +d +v++ EcC052744.10 5 LPLGYRFCPSDEEVFSYCLAPKVQGHVVFP-EFIREFDVYEKEPWKFF--NENAEKSLYVFTKLKMKK---SRVERTAGSGYWKgAKSTDFKVCH-- 93 699********************99555.79**********6..34567899998875...69*******44444555555.. PP NAM 97 gelvglkktLvfy.....kgrapkgektdWvmheyrl 128 +g kk L f + +++++ek +W+mhey+l EcC052744.10 94 -GIIGQKKHLNFKvkdssSFDSQNAEKGSWIMHEYSL 129 .79*****98776545889999*******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-26	4	132	IPR003441	NAC domain
PROSITE profile	PS51005	28.311	5	135	IPR003441	NAC domain
Pfam	PF02365	6.4E-19	6	129	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MADTLPLGYR FCPSDEEVFS YCLAPKVQGH VVFPEFIREF DVYEKEPWKF FNENAEKSLY 60 VFTKLKMKKS RVERTAGSGY WKGAKSTDFK VCHGIIGQKK HLNFKVKDSS SFDSQNAEKG 120 SWIMHEYSLP NQEVS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-16	4	129	16	142	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-16	4	129	16	142	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-16	4	129	16	142	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-16	4	129	16	142	NO APICAL MERISTEM PROTEIN
3swm_A	1e-15	4	129	19	145	NAC domain-containing protein 19
3swm_B	1e-15	4	129	19	145	NAC domain-containing protein 19
3swm_C	1e-15	4	129	19	145	NAC domain-containing protein 19
3swm_D	1e-15	4	129	19	145	NAC domain-containing protein 19
3swp_A	1e-15	4	129	19	145	NAC domain-containing protein 19
3swp_B	1e-15	4	129	19	145	NAC domain-containing protein 19
3swp_C	1e-15	4	129	19	145	NAC domain-containing protein 19
3swp_D	1e-15	4	129	19	145	NAC domain-containing protein 19
4dul_A	9e-16	4	129	16	142	NAC domain-containing protein 19
4dul_B	9e-16	4	129	16	142	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010039248.1	9e-95	PREDICTED: NAC domain-containing protein 19-like
TrEMBL	A0A059BXU7	5e-90	A0A059BXU7_EUCGR; Uncharacterized protein
STRING	XP_010039248.1	3e-94	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13343	7	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52890.1	5e-17	NAC domain containing protein 19