PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC052747.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 214aa    MW: 23497.2 Da    PI: 7.076
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC052747.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.36.2e-212271255
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  EcC052747.20 22 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYRLRG 71
                  59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.99E-322181No hitNo description
Gene3DG3DSA:3.30.730.108.3E-332280IPR001471AP2/ERF domain
SMARTSM003801.3E-372285IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-232280IPR016177DNA-binding domain
PROSITE profilePS5103223.2222279IPR001471AP2/ERF domain
PfamPF008471.9E-142371IPR001471AP2/ERF domain
PRINTSPR003671.5E-112334IPR001471AP2/ERF domain
PRINTSPR003671.5E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005774Cellular Componentvacuolar membrane
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005794Cellular ComponentGolgi apparatus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
GFLGPRAVPM KQAGLAQKPT KLYRGVRQRH WGKWVAEIRL PKNRTRLWLG TFDTAEEAAL  60
AYDKAAYRLR GDYARLNFPH LKHEGSHIQG DFGDYKPLHS SVDAKLQAIC QDMAEKPADG  120
KKRRSAPAGG GSSAAAASLR RPEPEPEPVK TEVGASAATS SSPESDDASV EESSPLSELT  180
FNDFVEPQWE SVGVPENFSL QKYPSDIDWA AIYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-212185469ATERF1
3gcc_A3e-212185469ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010060168.11e-131PREDICTED: ethylene-responsive transcription factor RAP2-4
SwissprotQ8H1E49e-74RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A059BKI81e-130A0A059BKI8_EUCGR; Uncharacterized protein
STRINGXP_010060168.11e-131(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-60related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]