PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC052750.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 338aa    MW: 37406.6 Da    PI: 6.5079
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC052750.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.3e-13159205455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    h  +Er+RR++i ++f  L  ++P++      K++Ka+iLe A++Y+k+Lq
  EcC052750.30 159 EHVLAERKRREKITERFIALSAVIPNL-----SKMDKASILEDAIKYLKELQ 205
                   6899**********************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.89E-18154218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.348155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-18159217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-11159205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.68E-15160209No hitNo description
SMARTSM003535.4E-16161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAEDAAYFHH HQQQQQQQQN SSFSLDDGFD LFHAHFPSEP SSNSLPSYLH PPISPYTMPG  60
FAARSVGTSQ AFTERPQKRL KTESCSSPCA TEHKTMTCNA AMLPAPSPSP DSRLISFGNP  120
DSSPAISDRL YGTFEVQDCE GPKMKSAGPM SRTPAHAQEH VLAERKRREK ITERFIALSA  180
VIPNLSKMDK ASILEDAIKY LKELQQRVKA LEEEVATKTM ESVIVVKKSE LAAADNMSSL  240
SDGNSCNQID QQLSLPEIEA RVSGKCVLIK IHCEKRNGFI SKLIGEIEKL NLTVENSCVM  300
PFGSSFLDVT ILAQMDVGFS LNVRDLVKNL RQALLDFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-14160214963Transcription factor MYC2
5gnj_B8e-14160214963Transcription factor MYC2
5gnj_E8e-14160214963Transcription factor MYC2
5gnj_F8e-14160214963Transcription factor MYC2
5gnj_G8e-14160214963Transcription factor MYC2
5gnj_I8e-14160214963Transcription factor MYC2
5gnj_M8e-14160214963Transcription factor MYC2
5gnj_N8e-14160214963Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168ERKRRE
2164169RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010023396.10.0PREDICTED: transcription factor bHLH18
SwissprotQ9T0722e-57BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A059B1T71e-155A0A059B1T7_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010023396.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-59bHLH family protein