PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC052817.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

DBB

Protein Properties

Length: 161aa MW: 17764.3 Da PI: 7.0106

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC052817.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.8	4.5e-08	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 C+ +e+ +++ C ++ lCe+C +e+H H++ EcC052817.30 4 QCDVCERAPATVICCADEAALCEKCDVEIHAAnklaskHQR 44 7*****************************65677777765 PP
2	zf-B_box	29.2	1.9e-09	53	95	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + + C+ + ek + +fC +++ l+C+dC + +H+ H+ EcC052817.30 53 KLPPCDICREKVAFIFCVEDRALFCQDCDEPIHSAgslsanHQ 95 6789*****************************6566666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	9.229	1	47	IPR000315	B-box-type zinc finger
CDD	cd00021	1.82E-5	3	47	No hit	No description
Pfam	PF00643	4.0E-6	4	44	IPR000315	B-box-type zinc finger
SMART	SM00336	7.5E-10	4	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.058	52	99	IPR000315	B-box-type zinc finger
SMART	SM00336	2.7E-14	52	99	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.2E-7	53	95	IPR000315	B-box-type zinc finger
CDD	cd00021	6.49E-7	55	98	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0016021	Cellular Component	integral component of membrane
GO:0004252	Molecular Function	serine-type endopeptidase activity
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MKIQCDVCER APATVICCAD EAALCEKCDV EIHAANKLAS KHQRLLLNCL SNKLPPCDIC 60 REKVAFIFCV EDRALFCQDC DEPIHSAGSL SANHQRFLAT GIKVALRSRC AKDGDKTHSK 120 PPNQSSQPVK TPHQQLSIST SPWGVDDLLQ LTDFESSDKV R

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269\|PubMed:12909688, ECO:0000269\|PubMed:17605755, ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:21685177, ECO:0000269\|PubMed:22410790, ECO:0000269\|PubMed:23624715}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269\|PubMed:17605755}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010045938.1	1e-111	PREDICTED: B-box zinc finger protein 24
Swissprot	Q96288	8e-67	BBX24_ARATH; B-box zinc finger protein 24
TrEMBL	A0A059DBE0	1e-110	A0A059DBE0_EUCGR; Uncharacterized protein
STRING	XP_010045938.1	1e-111	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06040.2	6e-71	DBB family protein

Publications ? help Back to Top
Gangappa SN,Holm M,Botto JF Molecular interactions of BBX24 and BBX25 with HYH, HY5 HOMOLOG, to modulate Arabidopsis seedling development. Plant Signal Behav, 2014. [PMID:23733077] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Imtiaz M, et al. Identification and functional characterization of the BBX24 promoter and gene from chrysanthemum in Arabidopsis. Plant Mol. Biol., 2015. 89(1-2): p. 1-19 [PMID:26253592] Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains. Plant Physiol., 2018. 176(4): p. 2963-2976 [PMID:29439209]