PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC052845.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family Trihelix
Protein Properties Length: 600aa    MW: 65401.7 Da    PI: 6.5303
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC052845.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix90.61.7e-2857141187
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                   rW++qe+laL+++r++m+  +r+++ k+plW++vs+k+ e g++rs+k+Ckek+en+ k++k++k+g+ ++   +++t+++fdqlea
  EcC052845.10  57 RWPRQETLALLKIRSDMDGVFRDASVKGPLWDDVSRKLGELGYNRSAKKCKEKFENVYKYHKRTKDGRTGK--HEKKTYRFFDQLEA 141
                   8********************************************************************96..44557*******85 PP
2trihelix107.96.5e-34421506187
      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                   rW+k ev aLi++r+++e++++++  k+plWee+s++mr+ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a
  EcC052845.10 421 RWPKVEVEALIKLRTDLESKYQENGPKGPLWEEISAAMRKAGYNRSAKRCKEKWENINKYFKKVKESNKQR-PEDSKTCPYFHQLDA 506
                   8********************************************************************98.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.01954116IPR001005SANT/Myb domain
PfamPF138372.3E-1756142No hitNo description
CDDcd122031.12E-2356121No hitNo description
PROSITE profilePS500906.93456114IPR017877Myb-like domain
PROSITE profilePS500907.538414478IPR017877Myb-like domain
SMARTSM007171.2E-4418480IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-4419477IPR009057Homeodomain-like
PfamPF138371.1E-23420507No hitNo description
CDDcd122032.57E-28420485No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003677Molecular FunctionDNA binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MASSGDAPAA AREGAEGGGG DNNSSAELCE SERGGERSVL GGAGGGGGGG GGGGGSRWPR  60
QETLALLKIR SDMDGVFRDA SVKGPLWDDV SRKLGELGYN RSAKKCKEKF ENVYKYHKRT  120
KDGRTGKHEK KTYRFFDQLE ALENQSPSPS VPPPQPPPQM AAAATAAVST AGPPFTVTSV  180
TTHHHIATSQ FSAAPPTGTV PPAGFPSSAG NVAVNLARGS GVASSTLPSM PGDLAISDAS  240
VPSSSSTSSD EELGPPTRRG MKRKWRGFFE RLTKEVMDKQ EAMHRKFLEM IEKREQERMA  300
REEAWRVQEI TRISREREIL AQEQSVVAAK DAAVLSFLQK IAEQQFPGQA QANPSPPPLQ  360
PQPQPPVRHV PNLSSPQPIS ALATTPGEII RYSQAQSQVV NMEIHRSANN GDKQAPRSSS  420
RWPKVEVEAL IKLRTDLESK YQENGPKGPL WEEISAAMRK AGYNRSAKRC KEKWENINKY  480
FKKVKESNKQ RPEDSKTCPY FHQLDAIYKE KSHKFEALAG QLPKPESSAM APLMVTPEQQ  540
WPPPPAERRM VDSTAEDMDS DHNPDEEEGD EEEDGDEGDY EVVANKPPSA GANSEDTHDC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257263RRGMKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062114.10.0PREDICTED: trihelix transcription factor GT-2 isoform X1
TrEMBLA0A059BU620.0A0A059BU62_EUCGR; Uncharacterized protein
STRINGXP_010062114.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-91Trihelix family protein