PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC052855.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

NAC

Protein Properties

Length: 133aa MW: 15445.6 Da PI: 9.4157

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC052855.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	75.9	9.6e-24	4	121	4	128
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 ++F+Ptde l +yL++k++g +l+ i+e+d+y+ ePw++ + ++e+ y F++ +k+ ++r r++ sg+Wk++ + + + gelv EcC052855.20 4 LVKFRPTDEHLFAHYLQQKATGAPLPP-GLIEECDLYSQEPWRIF-DT-TSEQTFYVFTTLRKN---KSRVLRTAGSGTWKEQHAMR-IPDILGELV 93 589*******************999.89**********6.32.345667888877664...579*******998754.5555899 PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g kk++ f gr +++++ +W+m e+++ EcC052855.20 94 GYKKSFKFQGGRGSSATSGRWIMYEFSM 121 **************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	27.302	1	133	IPR003441	NAC domain
Pfam	PF02365	5.8E-16	3	120	IPR003441	NAC domain
SuperFamily	SSF101941	2.22E-26	5	124	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0015074	Biological Process	DNA integration
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence Send to blast
MNPLVKFRPT DEHLFAHYLQ QKATGAPLPP GLIEECDLYS QEPWRIFDTT SEQTFYVFTT 60 LRKNKSRVLR TAGSGTWKEQ HAMRIPDILG ELVGYKKSFK FQGGRGSSAT SGRWIMYEFS 120 MCDERVRISF HVY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-17	1	127	20	151	NAC domain-containing protein 19
3swm_B	1e-17	1	127	20	151	NAC domain-containing protein 19
3swm_C	1e-17	1	127	20	151	NAC domain-containing protein 19
3swm_D	1e-17	1	127	20	151	NAC domain-containing protein 19
3swp_A	1e-17	1	127	20	151	NAC domain-containing protein 19
3swp_B	1e-17	1	127	20	151	NAC domain-containing protein 19
3swp_C	1e-17	1	127	20	151	NAC domain-containing protein 19
3swp_D	1e-17	1	127	20	151	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018720427.1	4e-87	PREDICTED: NAC domain-containing protein 41-like
Refseq	XP_018728632.1	2e-89	PREDICTED: NAC transcription factor 56
Refseq	XP_018728633.1	2e-89	PREDICTED: NAC transcription factor 56
TrEMBL	A0A059C0V6	6e-88	A0A059C0V6_EUCGR; Uncharacterized protein
STRING	XP_010058220.1	1e-88	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	2e-19	NAC domain containing protein 2