PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC052856.20

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

ERF

Protein Properties

Length: 138aa MW: 15131.8 Da PI: 5.1887

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC052856.20	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.2	9.8e-14	63	111	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r+++g+f ++eAa a++ a+k+++g EcC052856.20 63 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWIGTFSEEDEAAMAYDIAAKRFRG 111 89**9888.8*****3.....5******99***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	5.8E-9	63	111	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.68E-17	63	120	IPR016177	DNA-binding domain
CDD	cd00018	3.69E-26	63	118	No hit	No description
SMART	SM00380	4.2E-27	64	125	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.4E-20	64	120	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	18.993	64	119	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0015074	Biological Process	DNA integration
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MDGNIICIDE LSSTSDSNVT PLPSKSWQPR TPPQSLCRLG SGTSVTLDCE GGIKAESSKL 60 NSSKYKGVVP QPNGRWGAQI YEKHQRVWIG TFSEEDEAAM AYDIAAKRFR GQAAVTNFNQ 120 KSNTEDYDLE AAFLISHS

Functional Description ? help Back to Top
Source	Description
UniProt	Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269\|PubMed:15040885, ECO:0000269\|PubMed:9862967}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269\|PubMed:15040885}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010040940.1	1e-92	PREDICTED: AP2/ERF and B3 domain-containing transcription repressor TEM1
Swissprot	Q9ZWM9	1e-44	RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBL	A0A058ZSG9	3e-91	A0A058ZSG9_EUCGR; Uncharacterized protein
STRING	XP_010040940.1	4e-92	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	5e-47	related to ABI3/VP1 1

Publications ? help Back to Top
Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S RAV genes: regulation of floral induction and beyond. Ann. Bot., 2014. 114(7): p. 1459-70 [PMID:24812253] Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering. Plant Sci., 2015. 241: p. 78-95 [PMID:26706061] Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development. PLoS Genet., 2016. 12(2): p. e1005833 [PMID:26829043] Zhao Y, et al. ABA receptor PYL9 promotes drought resistance and leaf senescence. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54 [PMID:26831097]