PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC052985.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 261aa    MW: 28730.8 Da    PI: 7.2502
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC052985.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +lv +++q+G+g +W t +++ g++R++k+c++rw++yl
     EcC052985.20 14 RGAWSPEEDAILVSYIHQHGSGnNWITLPARAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding44.43.9e-1468111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +++eEd  ++ +   +G++ W++I+++++ gRt++++k++w++
     EcC052985.20  68 RGGFSEEEDNAILTLYSVFGSR-WSLISSRLP-GRTDNDVKNHWNT 111
                      788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.674962IPR017930Myb domain
SuperFamilySSF466891.25E-2611109IPR009057Homeodomain-like
SMARTSM007171.6E-111364IPR001005SANT/Myb domain
PfamPF002491.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-231569IPR009057Homeodomain-like
CDDcd001675.69E-91662No hitNo description
PROSITE profilePS5129423.84263117IPR017930Myb domain
SMARTSM007171.9E-1467115IPR001005SANT/Myb domain
PfamPF002498.3E-1368111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2370117IPR009057Homeodomain-like
CDDcd001672.75E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGRAPCCDKA SVKRGAWSPE EDAILVSYIH QHGSGNNWIT LPARAGLKRC GKSCRLRWLN  60
YLRPDIKRGG FSEEEDNAIL TLYSVFGSRW SLISSRLPGR TDNDVKNHWN TKLKKKLLSA  120
GKAACLRSDK NRNLGGRAVP DFPKLETHDD HIVDSSSYCL YNNSFSSLPQ LHASPGHQEH  180
SSFDHQDQKA PSFVAPKVMA SSDFGTGGNN FGAASSTSPQ EVSSLSSASS SLAFPGNDEA  240
NAEEEQIFLD FDYDILNSFW S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047644.10.0PREDICTED: transcription factor MYB36
TrEMBLA0A059CMI71e-180A0A059CMI7_EUCGR; Uncharacterized protein
STRINGXP_010047644.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37780.18e-61myb domain protein 87