PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053337.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 359aa    MW: 40075.2 Da    PI: 6.1771
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053337.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg WT+eEd +++ +v  +G+g+W++++++ g++R++k+c++rw +yl
     EcC053337.20 14 RGLWTPEEDAKILAYVSTYGTGNWTLVPEKAGLNRCGKSCRLRWTNYL 61
                     788*******************************************97 PP
2Myb_DNA-binding538e-1770110446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++eE++l+++++k +G++ W++Ia++++ gRt++++k++w++
     EcC053337.20  70 FSPEEEDLIINLHKIFGSR-WSLIAKHLP-GRTDNDVKNYWNT 110
                      89*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-24564IPR009057Homeodomain-like
PROSITE profilePS5129426.815965IPR017930Myb domain
SuperFamilySSF466892.11E-3111108IPR009057Homeodomain-like
SMARTSM007173.1E-151363IPR001005SANT/Myb domain
PfamPF002491.3E-161461IPR001005SANT/Myb domain
CDDcd001676.24E-121761No hitNo description
Gene3DG3DSA:1.10.10.604.8E-2565116IPR009057Homeodomain-like
SMARTSM007172.0E-1666114IPR001005SANT/Myb domain
PROSITE profilePS5129419.55566116IPR017930Myb domain
CDDcd001676.29E-1470112No hitNo description
PfamPF002492.7E-1570110IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044070Biological Processregulation of anion transport
GO:0055085Biological Processtransmembrane transport
GO:0005741Cellular Componentmitochondrial outer membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0008308Molecular Functionvoltage-gated anion channel activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MKRPPCCDKS NVKRGLWTPE EDAKILAYVS TYGTGNWTLV PEKAGLNRCG KSCRLRWTNY  60
LRPDLKHDGF SPEEEDLIIN LHKIFGSRWS LIAKHLPGRT DNDVKNYWNT KLKKKLQKMG  120
IDPLTHKPFS QIFSDFENMS GCPNARHRQI LPAPSCLTQV PAGSNSHLDA IMKPVMEQVH  180
ENFTAENHLS WSQYQVANQE VMQLQPYQCV LSEVTSSCSS SSSPTLTRLN TQQSDGPPLP  240
PPFVAWTGDS ISHQPFPTGN VLPKREGDLQ DIVSSSSINC ASDMAKQALP NTPVGTMACK  300
NEAKWAEPGD SCEGALELDC HFEDGSYSCF GSFTDAILDK DTKMRSELFP EFIDGLLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29141167108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010030787.10.0PREDICTED: transcription factor MYB35
TrEMBLA0A059AR010.0A0A059AR01_EUCGR; Uncharacterized protein
STRINGXP_010030787.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.14e-76MYB family protein