PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053469.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MIKC_MADS
Protein Properties Length: 166aa    MW: 18997.8 Da    PI: 9.6548
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053469.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.11.3e-291059251
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  rien + +qvtfskRr+g+lKKA+ELSvLCdaevaviifs++g+lye+ss
  EcC053469.10 10 RIENATSQQVTFSKRRAGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFSS 59
                  8***********************************************96 PP
2K-box46.41.7e-16851461172
         K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 
                   e+   +l+qe + ++++ie L+ ++R+l G++L+s+s+ ++q++ +qLe+sl ++R++K + 
  EcC053469.10  85 EQYILRLKQETTDMERKIELLEVSLRKLSGQCLGSCSIDDIQRMGDQLERSLGSVRERKVHA 146
                   55566899***************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.609161IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-39160IPR002100Transcription factor, MADS-box
CDDcd002651.11E-38279No hitNo description
SuperFamilySSF554551.7E-30376IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-30323IPR002100Transcription factor, MADS-box
PfamPF003193.6E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-303859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.68488166IPR002487Transcription factor, K-box
PfamPF014863.3E-1390147IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MARGKVQMRR IENATSQQVT FSKRRAGLLK KAYELSVLCD AEVAVIIFSQ KGRLYEFSST  60
SEIRKTIDRY RRSTNDAATY QASMEQYILR LKQETTDMER KIELLEVSLR KLSGQCLGSC  120
SIDDIQRMGD QLERSLGSVR ERKVHASLAY LSSSLSEVDV LRTFVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P2e-18160160Myocyte-specific enhancer factor 2B
1tqe_Q2e-18160160Myocyte-specific enhancer factor 2B
1tqe_R2e-18160160Myocyte-specific enhancer factor 2B
1tqe_S2e-18160160Myocyte-specific enhancer factor 2B
6c9l_A2e-18160160Myocyte-specific enhancer factor 2B
6c9l_B2e-18160160Myocyte-specific enhancer factor 2B
6c9l_C2e-18160160Myocyte-specific enhancer factor 2B
6c9l_D2e-18160160Myocyte-specific enhancer factor 2B
6c9l_E2e-18160160Myocyte-specific enhancer factor 2B
6c9l_F2e-18160160Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010041409.24e-98PREDICTED: MADS-box protein AGL42-like
SwissprotQ9FIS12e-55AGL42_ARATH; MADS-box protein AGL42
TrEMBLA0A058ZY023e-92A0A058ZY02_EUCGR; Uncharacterized protein
STRINGXP_010035068.15e-93(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7828413
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.48e-58AGAMOUS-like 42