PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053603.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 267aa    MW: 28772.5 Da    PI: 9.0917
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053603.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.1e-19102150355
           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+++AeIrdp+    + +r++lg+f+tae+Aa a+++a+++++g
  EcC053603.50 102 YRGVRQRP-WGKYAAEIRDPK----KaARVWLGTFDTAEGAALAYDEAALRFKG 150
                   9*******.**********94....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-12101150IPR001471AP2/ERF domain
SMARTSM003809.3E-37101164IPR001471AP2/ERF domain
PROSITE profilePS5103223.828101158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-32101159IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-21101159IPR016177DNA-binding domain
CDDcd000187.33E-31101159No hitNo description
PRINTSPR003679.7E-11102113IPR001471AP2/ERF domain
PRINTSPR003679.7E-11124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006904Biological Processvesicle docking involved in exocytosis
GO:0009846Biological Processpollen germination
GO:0009860Biological Processpollen tube growth
GO:0015031Biological Processprotein transport
GO:0015074Biological ProcessDNA integration
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0060321Biological Processacceptance of pollen
GO:0000145Cellular Componentexocyst
GO:0005829Cellular Componentcytosol
GO:0005886Cellular Componentplasma membrane
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEGRNWKRSK SQAGHVSAER EDGDKKRNNY AYPSSLMETG RSQQDTSAIV SALAQVIGSP  60
AAAESHHASL SSSASLSQSS LHDHQAPDAQ GKNKKLEVSR NYRGVRQRPW GKYAAEIRDP  120
KKAARVWLGT FDTAEGAALA YDEAALRFKG NKAKLNFPER VHSLPPPYGP ASNASQPQSQ  180
QLPPAFSSCD NHVGAQLMDG CAMPPPCPSF VRGQGPTSSA SASDYFQPLQ PTPSSSSSSS  240
STTSPFHQHD PQHSFDGFSS SWRSSQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-24100161163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010036848.11e-165PREDICTED: ethylene-responsive transcription factor ERF110
SwissprotQ9FH541e-38EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A059A4501e-166A0A059A450_EUCGR; Uncharacterized protein
STRINGXP_010036848.11e-165(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.12e-28ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]