PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053629.120
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 280aa    MW: 31985.2 Da    PI: 8.5803
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053629.120genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH162.2e-051692081155
                    HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +R ++i +++  L++l+ +      +K + a++L++A  YIk Lq
  EcC053629.120 169 KRSQKIGDKITALQKLVSPY-----GKTDTASVLQEASLYIKLLQ 208
                    6899**************99.....9****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.321158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-4169212No hitNo description
Gene3DG3DSA:4.10.280.106.6E-8169229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-9169219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0006817Biological Processphosphate ion transport
GO:0007264Biological Processsmall GTPase mediated signal transduction
GO:0055085Biological Processtransmembrane transport
GO:0005840Cellular Componentribosome
GO:0016021Cellular Componentintegral component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005315Molecular Functioninorganic phosphate transmembrane transporter activity
GO:0005524Molecular FunctionATP binding
GO:0005525Molecular FunctionGTP binding
GO:0008270Molecular Functionzinc ion binding
GO:0042626Molecular FunctionATPase activity, coupled to transmembrane movement of substances
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MSNSFLPSLQ SELFTIGNEF RMSNLEVSSM LDSKMNVHSN GGFYLQSKAF NDDYWLRDED  60
NVAIPAQPLN DLQTGYEYII SSCDTIYEQP RKKFLVPQTP NANHKEMKHQ LNGKEFVSRE  120
GFSVPQLKSM PLNEWNKNKR KRTLSNEEHH EVQNGSVKAQ RCRMQIPVKR SQKIGDKITA  180
LQKLVSPYGK TDTASVLQEA SLYIKLLQEQ IQNLFQMLSS SYSSVRALQP QPCIAVEVNG  240
EREIDLRSRG LCLVPVSSVQ EKSKEIHAEA HSRTIYQGSW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_010068885.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-22bHLH family protein