PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053656.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family C2H2
Protein Properties Length: 87aa    MW: 10238.6 Da    PI: 11.3035
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053656.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H224.19.4e-084264123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  y+Cp C+ sF ++ ++ +H+r+H
  EcC053656.40 42 YRCPRCNFSFATSQTFASHMRSH 64
                  9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-62864IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.98E-73165No hitNo description
PROSITE profilePS5015710.4294269IPR007087Zinc finger, C2H2
SMARTSM003552.9E-44264IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MALSNANPLP LGGSSSDAMA RIARAEYDRR NRSLPHPKYG PYRCPRCNFS FATSQTFASH  60
MRSHYRLESE EERRMRLEEK HRRRGKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296780.12e-16uncharacterized protein LOC17892574
TrEMBLA0A067EMM45e-15A0A067EMM4_CITSI; Uncharacterized protein (Fragment)
TrEMBLR0I0065e-15R0I006_9BRAS; Uncharacterized protein
STRINGXP_006296780.19e-16(Capsella rubella)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42640.12e-14C2H2 family protein