PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053683.30
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 336aa    MW: 36536.6 Da    PI: 10.0737
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053683.30genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding254.5e-08273315343
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                       W+  Ed  l++a k ++++   +W++Ia+ ++ g+t  +c+ r
     EcC053683.30 273 EWSSGEDIALLNALKAFPKDvpmRWEKIAAAVP-GKTKVDCVKR 315
                      7********************************.*******988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.913177213IPR017877Myb-like domain
SMARTSM007179.3E-5181234IPR001005SANT/Myb domain
SuperFamilySSF466896.32E-6183234IPR009057Homeodomain-like
CDDcd001670.00261185231No hitNo description
PROSITE profilePS500907.015266320IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.0E-6269322IPR009057Homeodomain-like
SMARTSM007171.0E-6270322IPR001005SANT/Myb domain
SuperFamilySSF466895.23E-10270319IPR009057Homeodomain-like
CDDcd001671.43E-6273315No hitNo description
PfamPF002491.5E-6273315IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006857Biological Processoligopeptide transport
GO:0005639Cellular Componentintegral component of nuclear inner membrane
GO:0003677Molecular FunctionDNA binding
GO:0005215Molecular Functiontransporter activity
GO:0005515Molecular Functionprotein binding
GO:0016747Molecular Functiontransferase activity, transferring acyl groups other than amino-acyl groups
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEFVDEGRPR FLFQARANPP PPPPPPSSSS SSSSPSAAGQ WRLPNKPFLV ATTALSAVLI  60
SLALLYVPSE PSRSLLLWLS LSLLVGPFAP SSLTGGSVRV GHGPVVEFPD PQQPPAGEDA  120
KKKPSQKRPK GQPPGNNAVV SPPIAEIDGR LGKKSEGNGV AIQGKSDLGF REKEKGKGKE  180
KENYWSEDEI ELLRKQLVKH PAGKPRRWEI IAEAFNGAHG VESVIKKAKE LADKKSSDKD  240
SYAQFLKNRK PLDERLNEEA DGNGGGEVRR ESEWSSGEDI ALLNALKAFP KDVPMRWEKI  300
AAAVPGKTKV DCVKRVSELK KDFRSSKAAK EGQMEE
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010055375.10.0PREDICTED: dnaJ homolog subfamily C member 2
RefseqXP_010055376.10.0PREDICTED: dnaJ homolog subfamily C member 2
SwissprotQ9ASQ25e-79MAMYB_ARATH; Transcription factor MAMYB
TrEMBLA0A059C0T40.0A0A059C0T4_EUCGR; Uncharacterized protein
STRINGXP_010055375.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.16e-76MYB_related family protein