PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053696.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family HD-ZIP
Protein Properties Length: 218aa    MW: 25280.2 Da    PI: 4.8286
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053696.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.91.3e-212475556
                  SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
      Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    f++eq++ Le++Fe++ +p+ +++ eLA++lgL+ rqV +WFqNrRa++k
  EcC053696.40 24 KGFSDEQIRLLETMFESEAKPDPRRKMELARELGLEPRQVAIWFQNRRARWK 75
                  569************************************************9 PP
2HD-ZIP_I/II1171.1e-3723113393
   HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                   k+ +s+eq++lLE++Fe+e k +p+rK+elareLgl+prqva+WFqnrRAR+k+kq+E++y++L+++yd+l +e e L++e+++L++el++
  EcC053696.40  23 KKGFSDEQIRLLETMFESEAKPDPRRKMELARELGLEPRQVAIWFQNRRARWKSKQVEQEYRVLRASYDKLLAEFECLKTEKQDLENELQK 113
                   889*************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.24E-201278IPR009057Homeodomain-like
PROSITE profilePS5007119.031777IPR001356Homeobox domain
SMARTSM003894.5E-201881IPR001356Homeobox domain
PfamPF000466.4E-192375IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.8E-222584IPR009057Homeodomain-like
CDDcd000863.04E-172678No hitNo description
PRINTSPR000311.2E-64857IPR000047Helix-turn-helix motif
PROSITE patternPS0002705275IPR017970Homeobox, conserved site
PRINTSPR000311.2E-65773IPR000047Helix-turn-helix motif
PfamPF021834.0E-1477118IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0009733Biological Processresponse to auxin
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0005840Cellular Componentribosome
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0016491Molecular Functionoxidoreductase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEKSENCTAG NMKKKKGKSK NMKKGFSDEQ IRLLETMFES EAKPDPRRKM ELARELGLEP  60
RQVAIWFQNR RARWKSKQVE QEYRVLRASY DKLLAEFECL KTEKQDLENE LQKLSGMLDK  120
NHGGGRICRE ASNLEDEDTD CKNEANPFGP HESFDQSLIV ASPDDQLNET EKSSEDVRES  180
RDEENCSVAL PEKWSNFGPS DILDYSCSNA APWWNFWT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16977RRARWKSKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018729630.11e-160PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A059DFB21e-159A0A059DFB2_EUCGR; Uncharacterized protein
STRINGXP_010068823.11e-151(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.15e-38homeobox 7