PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053745.50
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 218aa    MW: 22735.2 Da    PI: 5.8424
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053745.50genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.2e-172574255
           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                  +y+GVr ++ +g+++AeIrdp    k+ r++lg+f tae+Aa+a++aa++ ++g
  EcC053745.50 25 RYRGVRKRP-WGKFAAEIRDPA---KKCRIWLGTFATAEDAARAYDAAARGIYG 74
                  59*******.**********84...369********************987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.7E-112570IPR001471AP2/ERF domain
PROSITE profilePS5103222.3392582IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-302582IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-212583IPR016177DNA-binding domain
SMARTSM003803.6E-342588IPR001471AP2/ERF domain
CDDcd000188.36E-172584No hitNo description
PRINTSPR003671.2E-102637IPR001471AP2/ERF domain
PRINTSPR003671.2E-104864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006306Biological ProcessDNA methylation
GO:0006342Biological Processchromatin silencing
GO:0006662Biological Processglycerol ether metabolic process
GO:0009245Biological Processlipid A biosynthetic process
GO:0030422Biological Processproduction of siRNA involved in RNA interference
GO:0045454Biological Processcell redox homeostasis
GO:0051607Biological Processdefense response to virus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0008915Molecular Functionlipid-A-disaccharide synthase activity
GO:0015035Molecular Functionprotein disulfide oxidoreductase activity
GO:0016853Molecular Functionisomerase activity
GO:0035197Molecular FunctionsiRNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MRRPGATAGA AGFAAADARS PPEIRYRGVR KRPWGKFAAE IRDPAKKCRI WLGTFATAED  60
AARAYDAAAR GIYGAKARTN FAADPQSVGS QATGLDQAHN RPDLEVASDG FDASRPTSSS  120
LSSTVESFGG PRIANRVPVA VAAADRRPVQ PVPGDDCHSD CGSSSSVVDE VEDCCATPAP  180
APLSRRALPF DLNLPPQMDA AGGSDELNGD DLATALRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-192681359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-192681662ATERF1
3gcc_A2e-192681662ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010035499.11e-153PREDICTED: ethylene-responsive transcription factor 3
SwissprotO803391e-29ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A058ZZN51e-152A0A058ZZN5_EUCGR; Uncharacterized protein
STRINGXP_010035499.11e-152(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53170.18e-17ethylene response factor 8
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]