PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053780.10
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family ERF
Protein Properties Length: 261aa    MW: 28539.4 Da    PI: 10.1356
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053780.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.5e-214695255
           AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                  +y+GVr+++ +g+W+AeIrd +     +  r++lg+f+tae+Aa+a+++a+++++g
  EcC053780.10 46 KYRGVRQRP-WGKWAAEIRDpF-----KaSRVWLGTFDTAEGAARAYDRAALQFRG 95
                  8********.**********66.....56***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.4E-3345104IPR001471AP2/ERF domain
PfamPF008476.3E-144695IPR001471AP2/ERF domain
SuperFamilySSF541716.47E-2346104IPR016177DNA-binding domain
CDDcd000183.56E-3246105No hitNo description
PROSITE profilePS5103225.3346103IPR001471AP2/ERF domain
SMARTSM003803.9E-3746109IPR001471AP2/ERF domain
PRINTSPR003677.9E-124758IPR001471AP2/ERF domain
PRINTSPR003677.9E-126985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
GPAGSTTVET EKAERPAHGT APKYEYAYEA PTTMAASRLD PTVRRKYRGV RQRPWGKWAA  60
EIRDPFKASR VWLGTFDTAE GAARAYDRAA LQFRGSKAKL NFPENVRLRQ QPAPVASAAF  120
PSATHFTISR ELPASGNFDA TGYDGQAPMQ QFPENDFRAY HRDVAAHQER LQGRTMSLYE  180
QMLLSNSSFG SQFQPAFSLS PSSSSSSSSV LARSPNSSLF MPSPPNVTSR SQESRRGSGD  240
GVAVFSQPPW TDSSHYSSSS G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2345106466ATERF1
3gcc_A4e-2345106466ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027737.11e-164PREDICTED: ethylene-responsive transcription factor ABR1 isoform X1
RefseqXP_010027738.11e-164PREDICTED: ethylene-responsive transcription factor ABR1 isoform X2
TrEMBLA0A059AJY41e-144A0A059AJY4_EUCGR; Uncharacterized protein
STRINGXP_010027737.11e-163(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.16e-27related to AP2 6