PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053790.70
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 149aa    MW: 16522.8 Da    PI: 8.4648
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053790.70genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.12e-0533721054
                  HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  + R +++ +++ +L++l+ +      +K + a++L +A eYI+ L
  EcC053790.70 33 KERKEKLGEKIVQLQQLVSPY-----GKTDTASVLLEASEYIQFL 72
                  788899999*********999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.1E-102286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.8772372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.1E-122585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00252978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.85E-53377No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0042773Biological ProcessATP synthesis coupled electron transport
GO:0046488Biological Processphosphatidylinositol metabolic process
GO:0008137Molecular FunctionNADH dehydrogenase (ubiquinone) activity
GO:0042578Molecular Functionphosphoric ester hydrolase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MMEQKRSPCS VDHGTYTSLI PKRQKSDLSI SNKERKEKLG EKIVQLQQLV SPYGKTDTAS  60
VLLEASEYIQ FLHEQVKVLS APYLQTMPAT SMQEAEQYSL RSRGLCLVPL SCTAGFASTN  120
GADIWAPIKT TSPRLESQSR FSSEGSSFV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010039305.11e-106PREDICTED: transcription factor bHLH113 isoform X1
RefseqXP_010039307.11e-106PREDICTED: transcription factor bHLH113 isoform X2
SwissprotQ7XJU25e-59BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A058ZYC21e-105A0A058ZYC2_EUCGR; Uncharacterized protein
STRINGXP_010039305.11e-106(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.53e-61bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]