PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053795.20
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family bHLH
Protein Properties Length: 343aa    MW: 37536.8 Da    PI: 7.5337
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053795.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.2e-12181227455
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    h  +Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  EcC053795.20 181 DHILAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 227
                   5899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.663177226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-17181240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-10181227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-17182243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.86E-13182231No hitNo description
SMARTSM003531.0E-14183232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDDFNNFIHQ YNANSPDNGG LMTEEIATAL GETNNKNSNL QNCLYPSLHP SYPPFTSQNS  60
ITSTTTTTTC SDSSSERSWT GHERPAKLLK ASTCGSSSSS HLFSFSTSAS MASNLQQQVY  120
GNLQNPSATP KKEAVSQEYN MTFGSLSSGG VHPNNQNSSP KADLGIKRAY PVSRTPSSAQ  180
DHILAERKRR EKLSQRFIAL SAIVPGLKKM DKASVLGDAI KYLKQLQERV KSLEEQSKKK  240
TMESAVFVKK YQLSNDDDGS SCDESSDGYS ADQALPEIEA RVADKDVLIR IHCENQKAIA  300
ARIFGEVEKL NLSIVQSNVV RFGSSTLDIT IVAQVNINLS IFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-13181236863Transcription factor MYC2
5gnj_B1e-13181236863Transcription factor MYC2
5gnj_E1e-13181236863Transcription factor MYC2
5gnj_F1e-13181236863Transcription factor MYC2
5gnj_G1e-13181236863Transcription factor MYC2
5gnj_I1e-13181236863Transcription factor MYC2
5gnj_M1e-13181236863Transcription factor MYC2
5gnj_N1e-13181236863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185190ERKRRE
2186191RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028032.10.0PREDICTED: transcription factor bHLH18
SwissprotQ9T0721e-61BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A059ALG61e-116A0A059ALG6_EUCGR; Uncharacterized protein (Fragment)
STRINGXP_010028032.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-59bHLH family protein