PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EcC053822.30

Organism

Eucalyptus camaldulensis

Taxonomic ID

34316

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus

Family

MYB_related

Protein Properties

Length: 450aa MW: 49095.2 Da PI: 9.4719

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EcC053822.30	genome	ECGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.6	2.2e-16	58	102	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W++I +++g ++t+ q++s+ qk+ EcC053822.30 58 RERWTEEEHKKFLEALKLYGRA-WRRIEEYVG-TKTAVQIRSHAQKF 102 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.27E-16	52	106	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.148	53	107	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.5E-17	56	105	IPR006447	Myb domain, plants
SMART	SM00717	5.3E-13	57	105	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-9	58	100	IPR009057	Homeodomain-like
Pfam	PF00249	6.7E-14	58	101	IPR001005	SANT/Myb domain
CDD	cd00167	2.69E-10	60	103	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006011	Biological Process	UDP-glucose metabolic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0015992	Biological Process	proton transport
GO:0046034	Biological Process	ATP metabolic process
GO:0003677	Molecular Function	DNA binding
GO:0003983	Molecular Function	UTP:glucose-1-phosphate uridylyltransferase activity
GO:0005515	Molecular Function	protein binding
GO:0016765	Molecular Function	transferase activity, transferring alkyl or aryl (other than methyl) groups

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MQDQDGSAHS SNMTVGSNEM SLSDSLHSIT SISLKEQFSC ANDYAPKVRK PYTITKQRER 60 WTEEEHKKFL EALKLYGRAW RRIEEYVGTK TAVQIRSHAQ KFFSKVVKDP ADGKVETIEI 120 PPPRPKRKPM HPYPRKLLAH PINKESLPQE QPIRSGSPNF SVSELENQSP MSVLSTLGSD 180 GLGSSGASTP SGSSSPSSSG GVACRAGLSL FESPAEENGP ITSEKLELHA RGCEASGGAK 240 EEAPSRTLKL FGMTVSVTDS HWQSSSAVKS ESKEMKLQDP LSQDTLSATS PAKTNRVLNL 300 VQPRDTSTDH MEAGPAPSAP WLNLYGNLTI SLSPIRNKVA PRSTCGDINK NGIPESRNGV 360 TSNEFHSGFD LKLSFLSKPS STSVAPELMT RQERRGRGFM PYKRCMAEKE TQPSGATGLE 420 REVQRVRLSL ECASKLVESA SPLGPSNRIR

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MQDQDGSAHS SNMTVGSNEM SLSDSLHSIT SISLKEQFSC ANDYAPKVRK PYTITKQRER  60
WTEEEHKKFL EALKLYGRAW RRIEEYVGTK TAVQIRSHAQ KFFSKVVKDP ADGKVETIEI  120
PPPRPKRKPM HPYPRKLLAH PINKESLPQE QPIRSGSPNF SVSELENQSP MSVLSTLGSD  180
GLGSSGASTP SGSSSPSSSG GVACRAGLSL FESPAEENGP ITSEKLELHA RGCEASGGAK  240
EEAPSRTLKL FGMTVSVTDS HWQSSSAVKS ESKEMKLQDP LSQDTLSATS PAKTNRVLNL  300
VQPRDTSTDH MEAGPAPSAP WLNLYGNLTI SLSPIRNKVA PRSTCGDINK NGIPESRNGV  360
TSNEFHSGFD LKLSFLSKPS STSVAPELMT RQERRGRGFM PYKRCMAEKE TQPSGATGLE  420
REVQRVRLSL ECASKLVESA SPLGPSNRIR

Functional Description ? help Back to Top
Source	Description
UniProt	Morning-phased transcription factor integrating the circadian clock and auxin pathways. Binds to the evening element (EE) of promoters. Does not act within the central clock, but regulates free auxin levels in a time-of-day specific manner. Positively regulates the expression of YUC8 during the day, but has no effect during the night. Negative regulator of freezing tolerance. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Down-regulated and strongly decreased amplitude of circadian oscillation upon cold treatment. {ECO:0000269\|PubMed:19805390, ECO:0000269\|PubMed:23240770}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010062320.1	0.0	PREDICTED: protein REVEILLE 2
Swissprot	F4KGY6	1e-50	RVE1_ARATH; Protein REVEILLE 1
TrEMBL	A0A059BV06	0.0	A0A059BV06_EUCGR; Uncharacterized protein
STRING	XP_010062320.1	0.0	(Eucalyptus grandis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	6e-40	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Xu G, et al. REVEILLE1 promotes NADPH: protochlorophyllide oxidoreductase A expression and seedling greening in Arabidopsis. Photosyn. Res., 2015. 126(2-3): p. 331-40 [PMID:25910753] Jiang Z,Xu G,Jing Y,Tang W,Lin R Phytochrome B and REVEILLE1/2-mediated signalling controls seed dormancy and germination in Arabidopsis. Nat Commun, 2016. 7: p. 12377 [PMID:27506149]