PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053822.40
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family NAC
Protein Properties Length: 674aa    MW: 77066.7 Da    PI: 5.0927
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053822.40genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.71.8e-5661331128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                   lppGfrFhPtdeelv +yL++k++g+k+el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v s 
  EcC053822.40   6 LPPGFRFHPTDEELVAYYLNRKINGRKIEL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVNS- 100
                   79****************************.99***************6434555777**************************************. PP

           NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   ++++vg+kktLv+y+grap+g +tdWvmheyrl
  EcC053822.40 101 QNRAVGMKKTLVYYRGRAPHGARTDWVMHEYRL 133
                   8999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-654156IPR003441NAC domain
PROSITE profilePS5100561.8356156IPR003441NAC domain
PfamPF023651.1E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006011Biological ProcessUDP-glucose metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015992Biological Processproton transport
GO:0046034Biological ProcessATP metabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003983Molecular FunctionUTP:glucose-1-phosphate uridylyltransferase activity
GO:0005515Molecular Functionprotein binding
GO:0016765Molecular Functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MAPVALPPGF RFHPTDEELV AYYLNRKING RKIELEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QNRAVGMKKT LVYYRGRAPH  120
GARTDWVMHE YRLDERECEN ASGLQDAYAL CRVFKKSAVC MKVGERSSSM NLTVSQRSDD  180
LFLESRCDDM ESTDNYSVSL NTCSPSIMNE PSAFDEYQPH EAKWVQPQHE DTFQFPTPSF  240
SNRGALSYPP SQVDIALECA RLQHRFSIPP LRMESHAQDG FVHSQIPQSS LTQENTTKCD  300
ILQEILSVAQ ASQDLIQQSN PLFSWDANYT AMEDLNFSTG KETAYCHLIS DVPFARYNDK  360
SCNDLNARNV EIGDWMEDFK MDQGGSENLR WVGMSNKDME KTFGEENKVI PVENISNFQR  420
CGEEEAQGEI LPSSSYKELL EDEERGDFPL DFISGDRNGD FLDDGHVDDY SNSLSFEIVE  480
EVKVNHGMFV ATRQAAETIF HQMVPSQVVK VQSLNQGMIL NDLPFTSSYP KRRCELIRDS  540
NVRKFKSFAR GKFVGMKNSI IPSMKFGSSI VCMFALFLVH LIYLGEDVEY EILIDDSITA  600
TKDAQHIEEC NFNMRRMRKT ASIKWNDKSE NSTSITIDGD GNTRLHWKKT VFCLTIALVL  660
SCVWANQNIL TLEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-57116212171NO APICAL MERISTEM PROTEIN
1ut4_B3e-57116212171NO APICAL MERISTEM PROTEIN
1ut7_A3e-57116212171NO APICAL MERISTEM PROTEIN
1ut7_B3e-57116212171NO APICAL MERISTEM PROTEIN
4dul_A3e-57116212171NAC domain-containing protein 19
4dul_B3e-57116212171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010062323.10.0PREDICTED: NAC domain-containing protein 78
TrEMBLA0A059BTA30.0A0A059BTA3_EUCGR; Uncharacterized protein
STRINGXP_010062323.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101122632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-151NAC domain containing protein 28