PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053883.110
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB_related
Protein Properties Length: 245aa    MW: 27277.3 Da    PI: 4.5623
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053883.110genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.5e-162266147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+ T +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
    EcC053883.110 22 RGNITSDEEDLILRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSN 66
                     7999******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.356116IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-10228IPR009057Homeodomain-like
SuperFamilySSF466892.72E-19370IPR009057Homeodomain-like
PROSITE profilePS5129423.6721771IPR017930Myb domain
SMARTSM007178.7E-152169IPR001005SANT/Myb domain
PfamPF002493.4E-142266IPR001005SANT/Myb domain
CDDcd001677.18E-112667No hitNo description
Gene3DG3DSA:1.10.10.606.9E-202967IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0006508Biological Processproteolysis
GO:0006559Biological ProcessL-phenylalanine catabolic process
GO:0015935Cellular Componentsmall ribosomal subunit
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0004190Molecular Functionaspartic-type endopeptidase activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0016841Molecular Functionammonia-lyase activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
LKRCGKSCRM RWLNYLRPDI KRGNITSDEE DLILRLHKLL GNRWSLIAGR LPGRTDNEIK  60
NYWNSNLAKR EQGGKKPNPS KTENIKPIAT SEVKQDETQN PELVGDSALR NKDIVTLANS  120
ETAKSGQSSE YESSDVSLPA SMSREEPNLE QLMLDCTVGE SDLLEILDGS DFRFNKFEDI  180
SQVMNSVENE AMSKNNNVGA ASPGQAHNLS SEGLEMDDWI ADLAEMSSGF GSFSSILHGP  240
EDWIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2037040107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047391.11e-173PREDICTED: transcription factor WER
TrEMBLA0A059CMZ81e-143A0A059CMZ8_EUCGR; Uncharacterized protein
STRINGXP_010047391.11e-172(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.14e-40MYB family protein