PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcC053883.120
Organism
Eucalyptus camaldulensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family MYB
Protein Properties Length: 254aa    MW: 28888.9 Da    PI: 8.3553
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcC053883.120genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.7e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed++l d++k +G g W+ I+++ g++R++k+c++rw++yl
    EcC053883.120 14 RGAWTALEDQILTDYIKAHGEGKWRNIPKKSGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding55.31.5e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T+eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ 
    EcC053883.120  67 RGNITPEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                      7999******************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.156961IPR017930Myb domain
SuperFamilySSF466891.31E-2912108IPR009057Homeodomain-like
SMARTSM007176.4E-141363IPR001005SANT/Myb domain
PfamPF002493.0E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-241568IPR009057Homeodomain-like
CDDcd001678.67E-101661No hitNo description
PROSITE profilePS5129426.37762116IPR017930Myb domain
SMARTSM007171.6E-1666114IPR001005SANT/Myb domain
PfamPF002491.1E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2569116IPR009057Homeodomain-like
CDDcd001673.90E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0006508Biological Processproteolysis
GO:0006559Biological ProcessL-phenylalanine catabolic process
GO:0015935Cellular Componentsmall ribosomal subunit
GO:0003677Molecular FunctionDNA binding
GO:0003723Molecular FunctionRNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0004190Molecular Functionaspartic-type endopeptidase activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0016841Molecular Functionammonia-lyase activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MGRNPCCTKE GLNRGAWTAL EDQILTDYIK AHGEGKWRNI PKKSGLKRCG KSCRLRWLNY  60
LRPDIKRGNI TPEEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKKVQGEE  120
PKQPKKDETK KPKTKQPNKN LTPTPAANTN PNAIRPQPAK CNKITVYPEP QPEASVTDFS  180
SVQDLVKSSE GSPSILLEEE DFRNLPLDFS LSELLLADVP ESEFWKLCQF DNTLDQPLLF  240
SEEMMKGWAA EDGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-281211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010047392.10.0PREDICTED: transcription factor WER
TrEMBLA0A059CM760.0A0A059CM76_EUCGR; Uncharacterized protein
STRINGXP_010047392.10.0(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-61myb domain protein 3